Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2 141 4e-31 seq538 127 9e-27 seq404 125 3e-26 seq59 125 3e-26 seq83 122 4e-25 seq226 109 2e-21 seq749 105 3e-20 seq198 104 1e-19 seq115 95.1 5e-17 seq525 93.3 2e-16 seq308 93.3 2e-16 seq1 93.3 2e-16 seq1239 91.5 6e-16 seq195 91.5 6e-16 seq845 87.8 7e-15 seq1172 86.0 3e-14 seq826 82.4 3e-13 seq7 75.2 5e-11 >seq2 Length=16010500 Score = 141 bits (156), Expect = 4e-31 Identities = 113/135 (84%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || |||| |||||||||||||||||||||||||||| |||| || | Sbjct 8897003 GAGCACGAGCGTACGTGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGA-G 8896945 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||||| ||| ||||||||| | ||||| | Sbjct 8896944 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATTGGTCGTCCGACA 8896885 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 8896884 TGGGTATAGGGGCGA 8896870 >seq538 Length=1665627 Score = 127 bits (140), Expect = 9e-27 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || |||| |||||| ||||||||||||||||||||| |||| ||| Sbjct 335926 GAGCACGAGCGTATGTGTTAGGACCCAAAAGATGGTGAACTATGCCTGGGCAGGGCAAAG 335867 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| | || ||| ||| ||||||||| | ||||| | Sbjct 335866 CCAGAGGAAACTCTGGTGGAGGTCCATAGTGGTCCTGACGTGCAAATTGGTCGTCTGACC 335807 Query 669 TGGGTATAGGGGCGA 683 |||| |||||||||| Sbjct 335806 TGGGGATAGGGGCGA 335792 >seq404 Length=2183755 Score = 125 bits (138), Expect = 3e-26 Identities = 110/136 (81%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||||| ||||| ||||||||||||||||||||||||||| |||| ||| Sbjct 1718064 GAGCACGAGCATATCTGTTAAGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAG 1718123 Query 609 CCAGAGGAAACTCTGGTGGAGG-CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 |||||||||||||||||| ||| | | |||||| ||| ||||||||| || ||| | Sbjct 1718124 CCAGAGGAAACTCTGGTGAAGGTCCCTTAGCGGTCCTGATGTGCAAATCAGTCATCAGAC 1718183 Query 668 TTGGGTATAGGGGCGA 683 ||||||||| || || Sbjct 1718184 CTGGGTATAGAGGTGA 1718199 >seq59 Length=6325068 Score = 125 bits (138), Expect = 3e-26 Identities = 107/132 (81%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || |||| ||||| |||||||||||||||||||||| |||| |||| Sbjct 306688 GAGCACGAGCGTATGTGTTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAG 306629 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || || ||| ||| | ||||||||| ||||| | Sbjct 306628 CCAGAGGAAACTCTGGTGGAGGTCCGTAGTGGTCCTGACATGCAAATCGGTCGTCCGACC 306569 Query 669 TGGGTATAGGGG 680 |||||| || || Sbjct 306568 TGGGTAGAGAGG 306557 >seq83 Length=5509936 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 4199417 GAGTCGAGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 4199358 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| |||| || || | ||||| ||||||| |||||| | Sbjct 4199357 ACCGGCACGAGACCGATAGTCAACAAATACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 4199298 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 4199297 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 4199258 >seq226 Length=3478930 Score = 109 bits (120), Expect = 2e-21 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 589 TATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCG 648 |||||||| |||| |||||||||||||||||||||||||| || |||||| ||| || Sbjct 407178 TATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACG 407119 Query 649 TGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||| ||||| | ||||||||||||||| Sbjct 407118 TGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 407084 Score = 75.2 bits (82), Expect = 5e-11 Identities = 71/91 (78%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 75 AGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGA 134 ||||||| | | ||||| |||||||| ||| ||||||||||| ||||||| || | Sbjct 407035 AGGTAAACTCCATCTAAGGCTAAATACCGGCACGAGACCGATAGTCAACAAGTACCGTAA 406976 Query 135 TCGAAAGATGAAAAGCACTTTGGAAAGAGAG 165 ||||| ||||||| |||||| | |||||| Sbjct 406975 GGGAAAGTTGAAAAGAACTTTGAAGAGAGAG 406945 >seq749 Length=972768 Score = 105 bits (116), Expect = 3e-20 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 ||||||||||||||||||||| |||| ||||||||||||||||||||||||| | Sbjct 185611 AAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGATCTGT 185552 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTC 663 |||||| ||| ||||||||||| ||||| Sbjct 185551 AGCGGTCCTGACGTGCAAATCGGTCGTC 185524 >seq198 Length=3721735 Score = 104 bits (114), Expect = 1e-19 Identities = 116/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| | |||| | | ||||| ||||||| Sbjct 2284314 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGATAAACTCCATCTAAGGCTAAAT 2284255 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | || |||| ||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 2284254 ACCCG-CACAGACAGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 2284196 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 |||||||| || || ||||||| ||| | ||| Sbjct 2284195 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGG 2284162 >seq115 Length=4841617 Score = 95.1 bits (104), Expect = 5e-17 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | ||| || |||||| | | ||||| ||||||| Sbjct 921441 GAGTCGTGTTGCTTGGGAATGCAGCCCAAAACAGGTGGTAAACTCCATCTAAGGCTAAAT 921500 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 | |||| ||||| ||||| ||||||| | | ||||| ||||||| |||||| Sbjct 921501 ACTGGCACGAGACTGATAGTCAACAAGTACCATAAGGGAAAGTTGAAAAGAACTTTG 921557 >seq525 Length=1586369 Score = 93.3 bits (102), Expect = 2e-16 Identities = 98/128 (77%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| |||||| Sbjct 892698 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGACTAAAT 892639 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||| ||||| ||||||| || | ||||| ||||||| ||||| | Sbjct 892638 ACCGGCACGAGACTGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTT-AAG 892580 Query 160 AGAGAGTT 167 |||||||| Sbjct 892579 AGAGAGTT 892572 >seq308 Length=2802114 Score = 93.3 bits (102), Expect = 2e-16 Identities = 96/126 (76%), Gaps = 5/126 (4%) Strand=Plus/Minus Query 558 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAA 617 |||| |||| ||||| ||||||||||||| |||||||| | | |||||||||||| Sbjct 506454 CATATGTGTTAGGACCTGAAAGATGGTGAAATATGCCTGGACA-----AAGCCAGAGGAA 506400 Query 618 ACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 |||| |||||||| | || ||| ||| | ||||||| | | || | ||||||||| Sbjct 506399 ACTCAGGTGGAGGTCCATAGTGGTCCTGACATGCAAATTGGTTGTACGACCTGGGTATAG 506340 Query 678 GGGCGA 683 ||| || Sbjct 506339 GGGTGA 506334 >seq1 Length=17429815 Score = 93.3 bits (102), Expect = 2e-16 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 32 CCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAA 91 ||||| ||||| |||| ||||||||||||| | ||| ||| |||||| | | ||||| Sbjct 15421431 CCTTCCTAGAGTCAGGTTGCTTGGGAATGCAGCCCAAAACGGGTGGTAAACTCCATCTAA 15421372 Query 92 AGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCA 151 |||||||| || |||||| | || ||||||| ||| | ||||| ||||||| | Sbjct 15421371 GGCTAAATACCAGCACGAGACCAACAGTCAACAAGTACAGTAAGTGAAAGTTGAAAAGAA 15421312 Query 152 CTTTGGAAAGAGA 164 ||||| |||||| Sbjct 15421311 CTTTG--AAGAGA 15421301 >seq1239 Length=326292 Score = 91.5 bits (100), Expect = 6e-16 Identities = 106/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| ||||| ||||||||||||| | || ||| |||||||| | ||||||||||||| Sbjct 303395 GAGTC-AGTTGCTTGGGAATGCAGCCCAAAGTGGTTGGTAAATTCCATCTAAAGCTAAAT 303453 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||||| ||||| ||||||| | | |||| ||||||| |||||| | Sbjct 303454 ACCAGCACGAGACAGATAGTTAACAAGTACCATAAGTCAAAGTTGAAAAGAACTTTGAAG 303513 Query 160 AGAGAGTTAAAAAGCACGTGAA 181 | ||| || || || ||||| Sbjct 303514 AAAGACTTCAAGAGGGTGTGAA 303535 >seq195 Length=3676426 Score = 91.5 bits (100), Expect = 6e-16 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 47 GTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCC 106 |||| ||||||||||||| | || || |||||| | | ||||||| |||||| |||| Sbjct 15806 GTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAAGATAAATACTGGCA 15747 Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166 | ||||| |||| |||||| | | ||||| |||||| |||||| | ||||||| Sbjct 15746 AAAGACCAATAGTCAACAAGTGCCATAAGGGAAAGTTGAAAATAACTTTGAAGAGAGAGT 15687 Query 167 TAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 | || || | ||||| ||| | ||| || Sbjct 15686 TCAAGAGGGCATGAAACCGTTAAGAGGCAA 15657 >seq845 Length=878105 Score = 87.8 bits (96), Expect = 7e-15 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || |||| |||||| | | ||||| | ||| | Sbjct 171859 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGATAATT 171918 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || || |||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 171919 ACCAGCATGAAACCGATAGTCAACAAGTACTATAAGAGAAAGTTGAAAAGAACTTTGAAG 171978 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||| | || || | ||||| Sbjct 171979 AGAGAGCTCAAGAGGGCATGAAA 172001 >seq1172 Length=354277 Score = 86.0 bits (94), Expect = 3e-14 Identities = 100/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| ||||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 36678 GAGTC-AGTTGCTTGGGAATGCAGCCCAAAGTGGTTGGTAAACTCCATCTAAGGCTAAAT 36736 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || ||||| |||| | ||||| | | ||||| ||||||| |||||| | Sbjct 36737 ATCAGCACAAGACCAATAGTTAAGAAGTACCATAAGGGAAAGTTGAAAAGAACTTTGAAG 36796 Query 160 AGAGAGTTAAAAAG 173 ||||| || || || Sbjct 36797 AGAGACTTCAAGAG 36810 >seq826 Length=936100 Score = 82.4 bits (90), Expect = 3e-13 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 |||||||||||||| |||| ||| ||||||||||||||||| ||| | ||| || Sbjct 187519 TGAACTATGCCTGAGCAGGGCAAAGTCAGAGGAAACTCTGGTGCAGGTCCATAGCAGTCT 187460 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || | ||||||||| || || | |||||||||||| || Sbjct 187459 TGACATGCAAATCGGTCCTCCTACCTGGGTATAGGGGTGA 187420 >seq7 Length=11971544 Score = 75.2 bits (82), Expect = 5e-11 Identities = 92/125 (74%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||| | || ||| | |||| | | ||||| ||||||| Sbjct 10454552 GAGTCGGGTTGCTTGGGAATGCATTCCAAAGTGGTTGATAAACTCCATCTAAGGCTAAAT 10454611 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||||||||||| ||||| | | | ||||| ||||||| |||||| | Sbjct 10454612 ACCAGCAGGAGACCGATAGTCAACAAGCACCATAAGGGAAAGTTGAAAAGAACTTTG--A 10454669 Query 160 AGAGA 164 ||||| Sbjct 10454670 AGAGA 10454674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079875525650