Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq418 179 2e-43 seq83 167 1e-39 seq115 150 8e-35 seq525 141 4e-32 seq195 140 1e-31 seq1172 122 4e-26 seq198 107 9e-22 seq1239 104 1e-20 seq1124 91.5 7e-17 seq284 82.4 4e-14 >seq418 Length=2079112 Score = 179 bits (198), Expect = 2e-43 Identities = 101/102 (99%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1162400 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 1162341 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||||||||||||||||||||| |||||||||| Sbjct 1162340 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGAAATGTGGCGTA 1162299 >seq83 Length=5509936 Score = 167 bits (184), Expect = 1e-39 Identities = 97/100 (97%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 4199636 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACTGCGAGTGAACAGGGAAGAGCCCAGCG 4199577 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCG 100 ||||||||||||||||||||||||||||||| ||||||| Sbjct 4199576 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGAATTGTGGCG 4199537 >seq115 Length=4841617 Score = 150 bits (166), Expect = 8e-35 Identities = 94/101 (93%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 2 GAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGC 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 921253 GAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCAT 921312 Query 62 CGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||| ||||||||||||||||| ||| ||||| |||| Sbjct 921313 TGAATCCCTGCCCCGCGGTGGGGCGCAGGAAATGTGACGTA 921353 >seq525 Length=1586369 Score = 141 bits (156), Expect = 4e-32 Identities = 89/95 (94%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 9 AACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCG-AATC 67 |||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 892912 AACTAACCAGAATTCCCTCAGTAACGGCGATTGAACAGGGAAGAGCCCAGCGCCGAAATC 892853 Query 68 CCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | ||||||||||||||||||||| |||||||||| Sbjct 892852 GCTGCCCCGCGGTGGGGCGCGGGAAATGTGGCGTA 892818 >seq195 Length=3676426 Score = 140 bits (154), Expect = 1e-31 Identities = 91/100 (91%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 3 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCC 62 |||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||| Sbjct 16031 AAAAGAAACTAACCAGGATTCCCTCAGTAATGGTGAGTGAACAGGGAAGAGCACAGCGCC 15972 Query 63 GAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||| |||| || |||||| ||||||| || Sbjct 15971 GAATCCCCGCCCCACGGTAGGCAGCGGGAAATGTGGCTTA 15932 >seq1172 Length=354277 Score = 122 bits (134), Expect = 4e-26 Identities = 88/102 (86%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||| Sbjct 318335 GGAAAAGAAACTAACCAGAATTCCCTCAGTAAAGGTTAGTGAAAAGGGAAGAGCCCAGCA 318276 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | |||||||| ||||| |||| || | |||| ||||||| || Sbjct 318275 CTGAATCCCCACCCCGTGGTGAGGAGTGGGAAATGTGGCTTA 318234 Score = 107 bits (118), Expect = 9e-22 Identities = 89/110 (81%), Gaps = 8/110 (7%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||| |||||||||||||| | || |||||||||||||||||||||| Sbjct 216548 GGAAAAGAAACTAAATAGGATTCCCTCAGTGAAGGTGAGTGAACAGGGAAGAGCCCAGAA 216489 Query 61 CC--------GAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 || |||||||| |||| | ||||||| ||||| ||||||| || Sbjct 216488 CCCCAGAACTGAATCCCCACCCCACAGTGGGGCACGGGAAATGTGGCTTA 216439 Score = 104 bits (114), Expect = 1e-20 Identities = 89/110 (81%), Gaps = 9/110 (8%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAG------- 53 ||||||||||||||| |||||||||||||||| || ||||||||||||||||| Sbjct 36449 GGAAAAGAAACTAACTAGGATTCCCTCAGTAAAGGTGAGTGAACAGGGAAGAGCCCAGAA 36508 Query 54 -CCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||| |||||||||| || |||||||||| | | | ||||||| || Sbjct 36509 CCCCAGAACCGAATCCCC-ACCTGCGGTGGGGCACAGAAAATGTGGCTTA 36557 >seq198 Length=3721735 Score = 107 bits (118), Expect = 9e-22 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | Sbjct 2284103 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACAACAAGTGAACAGGGAAGAGCCCAGAG 2284044 Query 61 CCGAATCCCCGCCCCGC 77 || |||||| |||| || Sbjct 2284043 CCAAATCCCTGCCCAGC 2284027 >seq1239 Length=326292 Score = 104 bits (114), Expect = 1e-20 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||| ||||||||||||||||||||||||| || | ||||||| |||||||||| Sbjct 303173 GGAAAATAAACTAACCAGGATTCCCTCAGTAAAGGTTATTGAACAGATAAGAGCCCAGAA 303232 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTG 97 || ||||||| ||| | ||||||| || ||| ||||| Sbjct 303233 CCAAATCCCCACCCTGTGGTGGGGTGCAGGAAATGTG 303269 >seq1124 Length=357957 Score = 91.5 bits (100), Expect = 7e-17 Identities = 66/77 (86%), Gaps = 6/77 (8%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||| |||| ||||||||||||||| || |||||||||||||||||||||| Sbjct 6462 GGAAAAGAAACTTACCACGATTCCCTCAGTAACAGCAAGTGAACAGGGAAGAGCCCAGC- 6404 Query 61 CCGAATCCCCGCCCCGC 77 |||| ||||||| Sbjct 6403 -----TCCCTGCCCCGC 6392 >seq284 Length=3309238 Score = 82.4 bits (90), Expect = 4e-14 Identities = 58/65 (89%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 35 GCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACAT 94 |||||||||||||||||||||| ||||| ||| |||||||| |||||||||| ||| || Sbjct 392516 GCGAGTGAACAGGGAAGAGCCCGGCGCCAAAT-CCCGCCCCATGGTGGGGCGCAGGAAAT 392574 Query 95 GTGGC 99 ||||| Sbjct 392575 GTGGC 392579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230387465520