Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq441 251 1e-64
seq547 242 6e-62
seq254 145 1e-32
seq1357 111 3e-22
seq442 111 3e-22
seq1124 107 3e-21
seq521 96.9 6e-18
seq335 86.0 1e-14
>seq441
Length=2030139
Score = 251 bits (278), Expect = 1e-64
Identities = 214/264 (81%), Gaps = 15/264 (6%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1496523 TCATCAGTAGGGTAAAACTAACCTGTCT-----------AAACCCAGCTCACGTTCCATA 1496475
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||||||||||||||||| |||| || |||| || ||||||||||||| ||
Sbjct 1496474 TTAGTGGGTGAACAATCCAATGCTTGGTGACTTCT---TCACAATGATAGGAAGAGTTGA 1496418
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAAC-GCTTGGCTGCCACAAGCCAGTTATC 209
||||||||||||||||||| || || ||||||| |||||||||||||||||||||||||
Sbjct 1496417 CATCGAAGGATCAAAAAGCGACATCACTATGAAATGCTTGGCTGCCACAAGCCAGTTATC 1496358
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269
| |||||||||||||||| |||||| || | ||| | | || | ||||||| | ||
Sbjct 1496357 CTTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGGTCAGAAGGATCAAGAG 1496298
Query 270 GCCACACTTTCATGGTTTGTATTC 293
|| |||||||||||| | |||||
Sbjct 1496297 GCTCCACTTTCATGGTCTATATTC 1496274
>seq547
Length=1705473
Score = 242 bits (268), Expect = 6e-62
Identities = 176/204 (86%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 391 ATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCG 332
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 331 ACATTGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 272
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269
||| |||||||||||||| |||||| || | ||| | | || | |||||||| ||
Sbjct 271 CCTCTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGGTCAGAAGGATCGTGAG 212
Query 270 GCCACACTTTCATGGTTTGTATTC 293
||| | |||||| ||| |||||||
Sbjct 211 GCCCCGCTTTCACGGTCTGTATTC 188
>seq254
Length=3264618
Score = 145 bits (160), Expect = 1e-32
Identities = 121/147 (82%), Gaps = 1/147 (1%)
Strand=Plus/Plus
Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206
|||||||| |||||||||||| |||||| |||||||||||||||| |||||||||||||
Sbjct 1800526 CCGACATCAAAGGATCAAAAAACAACGT-GCTATGAACGCTTGGCCACCACAAGCCAGTT 1800584
Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266
||||||| |||||||||||| |||||| || ||| | | | || | |||||||
Sbjct 1800585 ATCCCTGCGGTAACTTTTCTAACACCTCCTGCTCAAAACTCCAAAGGTCAGAAGGATCAT 1800644
Query 267 TAGGCCACACTTTCATGGTTTGTATTC 293
||||| |||||||| ||| |||||||
Sbjct 1800645 GAGGCCCCACTTTCACGGTCTGTATTC 1800671
>seq1357
Length=230225
Score = 111 bits (122), Expect = 3e-22
Identities = 100/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206
|| |||| |||||||||||||| | || |||||||| | ||||| |||||||||||||
Sbjct 206410 CCAACATTGAAGGATCAAAAAGTGATGTTGCTATGAATGTTTGGCCACCACAAGCCAGTT 206469
Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266
||||||||||||||||||||| |||||| || | ||| | | || | |||||||
Sbjct 206470 ATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGGTCAGAAGGATCAT 206529
Query 267 TAGGCC 272
|||||
Sbjct 206530 GAGGCC 206535
>seq442
Length=2055734
Score = 111 bits (122), Expect = 3e-22
Identities = 105/132 (80%), Gaps = 4/132 (3%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||||||| |||||||||||| || ||| |||||| ||||||||| | || ||
Sbjct 713416 TCATCAGTAGGATAAAACTAACCTAACTAATG---GTCTAATCCCAGCTCATGGTCTGTA 713360
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||||||||||||| | |||| |||||||||||| ||||||||||| | |
Sbjct 713359 TTAGTGGGTGAACAATATTA-GCTTGGTGAATTCTGCTTCACAGTGATAGGAAGAACTAA 713301
Query 151 CATCGAAGGATC 162
||| ||||||||
Sbjct 713300 CATTGAAGGATC 713289
>seq1124
Length=357957
Score = 107 bits (118), Expect = 3e-21
Identities = 102/130 (78%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 167 AGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226
|||||||| ||||||| |||||||| |||||||||||||||| | |||||||||||||||
Sbjct 3740 AGCAACGTTGCTATGAGCGCTTGGCAGCCACAAGCCAGTTATGCATGTGGTAACTTTTCT 3799
Query 227 GGCACCTCTAGCCTCAAATTTC---GAGGGACTAAAGGATCGATAGGCCACACTTTCATG 283
| |||||| || | ||| | | | | ||||||| ||||| || |||||||
Sbjct 3800 GACACCTCCTGCTTAAAAAAACCATAAAGCTCGGAAGGATCATGAGGCCTCAGTTTCATG 3859
Query 284 GTTTGTATTC 293
|| |||||||
Sbjct 3860 GTCTGTATTC 3869
>seq521
Length=1575187
Score = 96.9 bits (106), Expect = 6e-18
Identities = 76/90 (84%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || |||||||||||||||||||||| ||||||
Sbjct 1172810 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACATGTCTC 1172751
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCT 89
| ||||||||||||||||||||| ||||||
Sbjct 1172750 ACGACGGTCTAAACCCAGCTCACATTCCCT 1172721
>seq335
Length=2667251
Score = 86.0 bits (94), Expect = 1e-14
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGG 253
||| |||||||||||||||||||||||||||||| |||||| || | ||| | | ||
Sbjct 2043607 CCATAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGG 2043666
Query 254 ACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||||||| ||||| | ||||||| || |||||||
Sbjct 2043667 TCAGAAGGATCATGAGGCCCCGCTTTCATAGTCTGTATTC 2043706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854350419168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |