Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq441 251 1e-64 seq547 242 6e-62 seq254 145 1e-32 seq1357 111 3e-22 seq442 111 3e-22 seq1124 107 3e-21 seq521 96.9 6e-18 seq335 86.0 1e-14 >seq441 Length=2030139 Score = 251 bits (278), Expect = 1e-64 Identities = 214/264 (81%), Gaps = 15/264 (6%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 1496523 TCATCAGTAGGGTAAAACTAACCTGTCT-----------AAACCCAGCTCACGTTCCATA 1496475 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||| |||| || |||| || ||||||||||||| || Sbjct 1496474 TTAGTGGGTGAACAATCCAATGCTTGGTGACTTCT---TCACAATGATAGGAAGAGTTGA 1496418 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAAC-GCTTGGCTGCCACAAGCCAGTTATC 209 ||||||||||||||||||| || || ||||||| ||||||||||||||||||||||||| Sbjct 1496417 CATCGAAGGATCAAAAAGCGACATCACTATGAAATGCTTGGCTGCCACAAGCCAGTTATC 1496358 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 | |||||||||||||||| |||||| || | ||| | | || | ||||||| | || Sbjct 1496357 CTTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGGTCAGAAGGATCAAGAG 1496298 Query 270 GCCACACTTTCATGGTTTGTATTC 293 || |||||||||||| | ||||| Sbjct 1496297 GCTCCACTTTCATGGTCTATATTC 1496274 >seq547 Length=1705473 Score = 242 bits (268), Expect = 6e-62 Identities = 176/204 (86%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 391 ATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCG 332 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 331 ACATTGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 272 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 ||| |||||||||||||| |||||| || | ||| | | || | |||||||| || Sbjct 271 CCTCTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGGTCAGAAGGATCGTGAG 212 Query 270 GCCACACTTTCATGGTTTGTATTC 293 ||| | |||||| ||| ||||||| Sbjct 211 GCCCCGCTTTCACGGTCTGTATTC 188 >seq254 Length=3264618 Score = 145 bits (160), Expect = 1e-32 Identities = 121/147 (82%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 |||||||| |||||||||||| |||||| |||||||||||||||| ||||||||||||| Sbjct 1800526 CCGACATCAAAGGATCAAAAAACAACGT-GCTATGAACGCTTGGCCACCACAAGCCAGTT 1800584 Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266 ||||||| |||||||||||| |||||| || ||| | | | || | ||||||| Sbjct 1800585 ATCCCTGCGGTAACTTTTCTAACACCTCCTGCTCAAAACTCCAAAGGTCAGAAGGATCAT 1800644 Query 267 TAGGCCACACTTTCATGGTTTGTATTC 293 ||||| |||||||| ||| ||||||| Sbjct 1800645 GAGGCCCCACTTTCACGGTCTGTATTC 1800671 >seq1357 Length=230225 Score = 111 bits (122), Expect = 3e-22 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 || |||| |||||||||||||| | || |||||||| | ||||| ||||||||||||| Sbjct 206410 CCAACATTGAAGGATCAAAAAGTGATGTTGCTATGAATGTTTGGCCACCACAAGCCAGTT 206469 Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266 ||||||||||||||||||||| |||||| || | ||| | | || | ||||||| Sbjct 206470 ATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGGTCAGAAGGATCAT 206529 Query 267 TAGGCC 272 ||||| Sbjct 206530 GAGGCC 206535 >seq442 Length=2055734 Score = 111 bits (122), Expect = 3e-22 Identities = 105/132 (80%), Gaps = 4/132 (3%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| |||||||||||| || ||| |||||| ||||||||| | || || Sbjct 713416 TCATCAGTAGGATAAAACTAACCTAACTAATG---GTCTAATCCCAGCTCATGGTCTGTA 713360 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||| | |||| |||||||||||| ||||||||||| | | Sbjct 713359 TTAGTGGGTGAACAATATTA-GCTTGGTGAATTCTGCTTCACAGTGATAGGAAGAACTAA 713301 Query 151 CATCGAAGGATC 162 ||| |||||||| Sbjct 713300 CATTGAAGGATC 713289 >seq1124 Length=357957 Score = 107 bits (118), Expect = 3e-21 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 167 AGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226 |||||||| ||||||| |||||||| |||||||||||||||| | ||||||||||||||| Sbjct 3740 AGCAACGTTGCTATGAGCGCTTGGCAGCCACAAGCCAGTTATGCATGTGGTAACTTTTCT 3799 Query 227 GGCACCTCTAGCCTCAAATTTC---GAGGGACTAAAGGATCGATAGGCCACACTTTCATG 283 | |||||| || | ||| | | | | ||||||| ||||| || ||||||| Sbjct 3800 GACACCTCCTGCTTAAAAAAACCATAAAGCTCGGAAGGATCATGAGGCCTCAGTTTCATG 3859 Query 284 GTTTGTATTC 293 || ||||||| Sbjct 3860 GTCTGTATTC 3869 >seq521 Length=1575187 Score = 96.9 bits (106), Expect = 6e-18 Identities = 76/90 (84%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || |||||||||||||||||||||| |||||| Sbjct 1172810 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACATGTCTC 1172751 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCT 89 | ||||||||||||||||||||| |||||| Sbjct 1172750 ACGACGGTCTAAACCCAGCTCACATTCCCT 1172721 >seq335 Length=2667251 Score = 86.0 bits (94), Expect = 1e-14 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGG 253 ||| |||||||||||||||||||||||||||||| |||||| || | ||| | | || Sbjct 2043607 CCATAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGG 2043666 Query 254 ACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||||||| ||||| | ||||||| || ||||||| Sbjct 2043667 TCAGAAGGATCATGAGGCCCCGCTTTCATAGTCTGTATTC 2043706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854350419168