Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq826 161 2e-37 seq441 158 2e-36 seq338 138 2e-30 seq121 109 1e-21 seq402 105 1e-20 seq6 91.5 3e-16 seq15 86.0 1e-14 seq286 84.2 4e-14 seq883 80.6 5e-13 >seq826 Length=936100 Score = 161 bits (178), Expect = 2e-37 Identities = 195/259 (75%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| || || | |||| || | | ||| |||||||||||||||| Sbjct 121342 CTTCTTAGAGGGACAATTGGTGTTCAGCCACCCGA-GATGGAG-CAATAACAGGTCTGTG 121399 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||| |||||||| | ||| |||||| ||||||||| || | || | || | Sbjct 121400 ATGCCATTAGATGTCCCAGGCTGCACGCTCGCTACACTAACTGGCTCAGCATGTGACTAC 121459 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT-CGTGCTGGGGATAGAGCATT 249 ||| || || |||| |||||| | ||| ||| || | | || ||||| ||| | ||| Sbjct 121460 CCTACGCTGGCAGGTGCGGGTAACCC-GTTGAACCCTATTCATGATGGGGGTAGGGGATT 121518 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | || ||||||| || |||||| ||| ||||| ||| |||||||| Sbjct 121519 GCAATTATTACCCATGAATGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGAT 121578 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 121579 TAAGTCCCTGCCCTTTGTA 121597 Score = 107 bits (118), Expect = 4e-21 Identities = 194/274 (71%), Gaps = 20/274 (7%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||| ||| | ||| | |||| || | ||||| ||||||||||||| || Sbjct 185008 CTTCTTAGAGAGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTCTG 185065 Query 131 ATGCCCTTAGATGTTCTGGGCCGCAC--GCGCGCTACACTGACAG----AGCCA----AC 180 |||||||||| ||| | |||| |||| | || |||||||||| | || || || Sbjct 185066 ATGCCCTTAGGTGTCCCGGGCTGCACATGTGCACTACACTGACTGGATCAGTCAGTGGAC 185125 Query 181 --GA---GTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAA-CTCTGTCGTGC 234 || || | | ||| ||| || |||| || || || || || | | || || Sbjct 185126 TGGATCGGTGCCTACCCTAGGCTGGCAGGTGCAGGAAA-CTCATTGAATCCCATTCTTGA 185184 Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 ||||||| | | | |||||||||| ||| | ||| || ||| || |||||| || |||| Sbjct 185185 TGGGGATTGGGGAGTGCAATTATTCCTCATGAACAAGTAATTCCCAGTAAGTGCAGGTCA 185244 Query 295 TCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||| || ||||||| || |||||||||||| Sbjct 185245 TAAGCTTGCATTGATTAAATCTCTGCCCTTTGTA 185278 >seq441 Length=2030139 Score = 158 bits (174), Expect = 2e-36 Identities = 190/254 (75%), Gaps = 7/254 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1495683 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 1495740 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 1495741 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 1495800 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | |||| Sbjct 1495801 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCAGGGATTG 1495860 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| | | ||||| |||| ||| Sbjct 1495861 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGAGGGTCAT----ACGCTGACATT 1495916 Query 311 ACGTCCCTGCCCTT 324 | |||||||||||| Sbjct 1495917 AAGTCCCTGCCCTT 1495930 Score = 114 bits (126), Expect = 2e-23 Identities = 161/224 (72%), Gaps = 9/224 (4%) Strand=Plus/Plus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 ||| ||||| || |||||| |||||| ||||||||||||| | |||| |||| | | || Sbjct 1392740 AAGATTGAG-CAGTAACAGATCTGTGGTGCCCTTAGATGTCCGGGGCTGCACCCAC--TA 1392796 Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224 ||||||||| || || || | | || | || |||| ||||| || | || | Sbjct 1392797 CACTGACAGGCTCAGCGTGTGCCTACTCTACACTGGCAGGTGCTGGTAACCTGTTGAACC 1392856 Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 | | ||| ||||| ||| |||||||| | | | || ||||||| || ||||| Sbjct 1392857 CCATTTGTGATGGGGG------ATTACAATTATTCCCCATGAATGAGGAATTCCCAGTAA 1392910 Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | | ||||| ||| | |||||||| |||||||||||||||| Sbjct 1392911 GTGTGGGTCATAAGCGTGTGTTGATTAAGTCCCTGCCCTTTGTA 1392954 >seq338 Length=2461381 Score = 138 bits (152), Expect = 2e-30 Identities = 160/214 (75%), Gaps = 9/214 (4%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| ||||||||||||| Sbjct 2400710 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTAC 2400652 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| | || || || | | ||| ||| | ||| |||||| || | || | Sbjct 2400651 ACTGACTGGCTCAGCGTGTGCCTACCCTACGCCAGCAGGCGCGGGTAACCTGTTGAACCC 2400592 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||| ||||| |||||||||||| | | | ||||||||| || |||||| Sbjct 2400591 CATTCGTGATGGGG-------ATTGCAATTATTCCCCATGGACGAGGAATTCCCAGTAAG 2400539 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 | | |||| ||| || ||||||| ||||||| Sbjct 2400538 TGAGGATCATAAGCTTGCATTGATTA-GTCCCTG 2400506 >seq121 Length=4977944 Score = 109 bits (120), Expect = 1e-21 Identities = 182/258 (71%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | || | |||| | || ||||| ||||| |||||||||| Sbjct 1925404 CTTCTTAGAGGGACAACTAGCATTCAGCCACCG--AGATTGAG-CAATAGCAGGTCTGTG 1925348 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||| ||| | | || ||| || ||||||||||| | || || | | Sbjct 1925347 ATGCCCTTAGGTGT-CGGCGCTGCATGCATGCTACACTGACTGGCTCAGTGATTGCCAAC 1925289 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || | |||| || || || || | | ||||| | ||||| | |||| Sbjct 1925288 CCTACACCAGCAGGTGCGGATAGTCCGTGGAACCCCATTCGTGATAGGGATCAGGGATTG 1925229 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | | | |||||| || |||||| | | ||||| ||| | ||||||| Sbjct 1925228 CAATTATTACCCATGAGCAAGGAATTCCCAGTAAGTGTGGGTCATAAGCTTGAGTTGATT 1925169 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||| ||| Sbjct 1925168 AAGTCCCTGCCCTTAGTA 1925151 >seq402 Length=2174813 Score = 105 bits (116), Expect = 1e-20 Identities = 117/151 (77%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1558748 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 1558805 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 1558806 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 1558865 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTA 221 ||| ||||| ||| |||||| || |||| Sbjct 1558866 CCTACGCCGGCAGGCGCGGGTAA-CTAGTTA 1558895 >seq6 Length=12956524 Score = 91.5 bits (100), Expect = 3e-16 Identities = 78/95 (82%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| ||||||| | | |||||||||||| | | | |||||||||| || |||||| || Sbjct 419833 TCGTGATGGGGATGGGG-ATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGC 419891 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCT 323 | ||||| ||| || ||||||| ||||||||||| Sbjct 419892 GAGTCATAAGCTTGCTTTGATTAAGTCCCTGCCCT 419926 >seq15 Length=10322312 Score = 86.0 bits (94), Expect = 1e-14 Identities = 158/228 (69%), Gaps = 14/228 (6%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | ||| ||||| |||||||||||||||| Sbjct 7250287 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACTC-AAGATTGAG-CAATAACAGGTCTGTG 7250344 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||||| || ||| ||| ||||||| | || || || | | Sbjct 7250345 ATGCCCTTAGATG-TCAGGG----------GCTGCACTGACTGGCTCAGCGTGTGCCTAC 7250393 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| | || ||| ||||| | | || | | | ||| | ||||| | | |||| Sbjct 7250394 CCTACGAAGGCAGGCGCAGGTAACCCGTTGAACCCCATTTGTGATAGGGATTGGGGATTG 7250453 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAG 298 |||||||| | | | ||| | |||| || |||||| ||| ||||| || Sbjct 7250454 CAATTATTCCCCATGAACAAAGAATTCCCAGTAAGTGCGGGTCATAAG 7250501 >seq286 Length=2937124 Score = 84.2 bits (92), Expect = 4e-14 Identities = 59/66 (89%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| |||| | |||||| Sbjct 1304120 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACACACGCTAC 1304062 Query 166 ACTGAC 171 |||||| Sbjct 1304061 ACTGAC 1304056 >seq883 Length=813231 Score = 80.6 bits (88), Expect = 5e-13 Identities = 57/64 (89%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| ||| |||| |||| Sbjct 92947 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCATGCGCTCTAC 93005 Query 166 ACTG 169 |||| Sbjct 93006 ACTG 93009 Score = 75.2 bits (82), Expect = 2e-11 Identities = 57/66 (86%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| | || ||||||| Sbjct 92819 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCAGGGCTGAACATGCGCTAC 92877 Query 166 ACTGAC 171 | |||| Sbjct 92878 AGTGAC 92883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947145033984