Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq109 104 4e-20
seq166 86.0 1e-14
seq521 77.0 5e-12
>seq109
Length=5028047
Score = 104 bits (114), Expect = 4e-20
Identities = 93/114 (82%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 1758484 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 1758427
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1758426 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 1758373
>seq166
Length=4123509
Score = 86.0 bits (94), Expect = 1e-14
Identities = 93/121 (77%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| |||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 1769927 GTAGGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 1769870
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| | ||||||||||||| |||||||| ||||| |||||||||||||||| | | |||
Sbjct 1769869 GGGGTGAAGCTACCATCTATGGGATTATGACTGAATGCCTCTAAGTCAGAATTCCTCCCA 1769810
Query 121 G 121
|
Sbjct 1769809 G 1769809
>seq521
Length=1575187
Score = 77.0 bits (84), Expect = 5e-12
Identities = 59/70 (84%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104
|| |||| || || || |||||||||||||||| |||||||| ||||||||||||||
Sbjct 1172612 TGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAA 1172671
Query 105 GTCAGAATCC 114
|||||||||
Sbjct 1172672 ATCAGAATCC 1172681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819153947392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |