Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq826 279 2e-72 seq15 244 3e-62 seq1124 140 1e-30 seq441 140 1e-30 seq92 120 9e-25 seq642 107 6e-21 >seq826 Length=936100 Score = 279 bits (308), Expect = 2e-72 Identities = 395/552 (72%), Gaps = 55/552 (10%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| ||||||||||| | || | |||||| ||||||| ||||| | |||||||| | Sbjct 119716 ACTCTTTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACTTT 119657 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || | ||| ||| ||||||||||| || ||||||||||||||||||||||||||| |||| Sbjct 119656 CCTGGGTCAGGAGTGGGTAATTTGTGCACCTGCTGCCTTCCTTGGATGTGGTAGCTGTTT 119597 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 119596 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 119537 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC-T 240 || |||||||||||||||||||||||||| || |||| |||||| | | | Sbjct 119536 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCCAATGGGTCATCGCTGCCAT 119477 Query 241 CAAGGCCATGCGA--TTCGTTAAGTTATTATGAATCACCAAGG-----AGC--------- 284 || ||||||| | | | | ||||| || ||||||| | ||| Sbjct 119476 GGGGGGCATGCGATCTGCCTGAGGTTATCTAGAGTCACCAAAGCCGCCAGCGCCCGGCCC 119417 Query 285 -------------CCCGAAGG---------GCGTTGGTTTTTTATCTAATAAATACACCC 322 || ||||| | ||||| |||| |||| |||||| ||| | Sbjct 119416 CCCCTGGCTGGAGCCGGAAGGAGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGC 119358 Query 323 CTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTC----TAGAATTACCACGGTTATCCA 378 |||| | | | | | | ||| | | |||||||| || |||| Sbjct 119357 ATTCCCCCCCCCCCCCCGTGA-AAGGGGTCAGCGCCCATCGGCATTACCACAGTCGTCCA 119299 Query 379 TGTAGTA----AGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTT 434 |||| | || | | | ||| ||| ||||||||||||||||||||||| |||||| Sbjct 119298 AGTAGGAGAGGAGCAAGTGACCAATGAACCATAACTGATTTAATGAGCCATTCTCAGTTT 119239 Query 435 CACTGTA--TAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATAT 492 ||||||| | ||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 119238 CACTGTACCTGCCGTGC--GTACTTAGACATGCATGGCTTAATCTTTGAGACAAGAATAT 119181 Query 493 GACTACTGGCAG 504 | |||||||||| Sbjct 119180 G-CTACTGGCAG 119170 Score = 161 bits (178), Expect = 3e-37 Identities = 126/149 (85%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || |||||| ||||||| ||||| |||||||||||| Sbjct 184135 ACTCATTCCAATTACAGGTCCTTGAAAGAGTCCTGTATTGTTATTTTCTGTCACTACCTC 184076 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| |||||||||||||||||||| ||||||||| || ||| |||||||||||| ||| Sbjct 184075 CCCTGGTCGGGATTGGGTAATTTGCATGCCTGCTGCTTTACTTAGATGTGGTAGCCATTT 184016 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCT 150 |||||||||||||| ||||| |||||| Sbjct 184015 CTCAGGCTCCCTCTTGGGAATTAAACCCT 183987 Score = 140 bits (154), Expect = 1e-30 Identities = 133/167 (80%), Gaps = 10/167 (6%) Strand=Plus/Minus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT-----ATCAAAT 399 |||||||||||||| || ||||| |||||||| |||| || | | | | |||| Sbjct 183838 CATGTATTAGCTCTCATATAACCACAGTTATCCAAGTAGGAAAGGAGTGAATGACCAAAG 183779 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT--TGCTTATACTT 457 ||| ||||| |||||||||||||||| ||||||||||||| | ||| |||||| Sbjct 183778 GAACCATAACCAATTTAATGAGCCATTCCCAGTTTCACTGTACTGGCCATGC--ATACTT 183721 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| ||| | ||||||||||||||||||||||| |||||||||| Sbjct 183720 AGACATACATAGTTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 183675 >seq15 Length=10322312 Score = 244 bits (270), Expect = 3e-62 Identities = 193/233 (83%), Gaps = 9/233 (4%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCA---------AAAGAGCCCTGTATCAGTATTTATTGTC 53 |||||||||||||||| | || |||||| ||||||| ||||| ||||| Sbjct 8004314 ACTCATTCCAATTACAGGGCCTGTATTGTTATAAAGAGTCCTGTATTGTTATTTTTTGTC 8004255 Query 54 ACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGT 113 ||||||||||| |||||| ||||||||||| | ||||||||||||||||||||||||| Sbjct 8004254 ACTACCTCCCCAGATCGGGAGTGGGTAATTTGTGTGCCTGCTGCCTTCCTTGGATGTGGT 8004195 Query 114 AGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATAC 173 ||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| | || Sbjct 8004194 AGCTGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCAC 8004135 Query 174 CATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 |||||||||| |||||||||||||||||||||||||| || ||||| Sbjct 8004134 CATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATG 8004082 >seq1124 Length=357957 Score = 140 bits (154), Expect = 1e-30 Identities = 129/160 (81%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 ||||||| | | ||| |||||| ||||||| | |||||||||||||||||||||||||| Sbjct 7205 CCTCCCCAGGCCAGGAGTGGGTA-TTTGCGCACTTGCTGCCTTCCTTGGATGTGGTAGCC 7147 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTG-ATACCAT 176 |||||||||||||||||| |||||| |||||| | |||| || |||||| | |||| Sbjct 7146 ATTTCTCAGGCTCCCTCTCTGGAATCAAACCCTGACTCCCAGTCACCCGTGGTCCCCCAT 7087 Query 177 GGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 ||||||| ||| |||||||| || ||||||||| Sbjct 7086 GGTAGGCATGGCAACTAACATCGAAACTT--TAGGGCAGA 7049 >seq441 Length=2030139 Score = 140 bits (154), Expect = 1e-30 Identities = 140/182 (77%), Gaps = 16/182 (9%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 1482345 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTAT---TATTTTTCGTCACTACCTC 1482289 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || | || |||| || ||||||||| ||||||||||||||||||||||||| Sbjct 1482288 CCGGGGTTGGGAGTGAGTAATTTGCATCCCTGCTGCCTTCCTTGGATGTGGTA------- 1482236 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||||||| ||| || |||||| ||||||| | ||| || | || ||| ||| Sbjct 1482235 -----GCTCCCTCTCTGGATTCTAACCCTTATTCCCCATCACCTGTGGTCACTATGATAG 1482181 Query 182 GC 183 || Sbjct 1482180 GC 1482179 >seq92 Length=5367877 Score = 120 bits (132), Expect = 9e-25 Identities = 101/123 (82%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 115 GCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACC 174 |||||||||||||||| ||||||||||||||||| |||||||||| |||||| | ||| Sbjct 616735 GCCGTTTCTCAGGCTCTCTCTCCGGAATCGAACC--AATTCCCCGTCACCCGTGGTCACC 616678 Query 175 ATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCG 234 || |||||| ||||||||||||||||||||| |||| ||| ||||| | ||| Sbjct 616677 ATAGTAGGCACGGCGACTACCATCGAAAGTTGATAGGACAGACATTCGAATGGGTCGTCG 616618 Query 235 CCG 237 ||| Sbjct 616617 CCG 616615 Score = 77.0 bits (84), Expect = 1e-11 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC 116 ||| ||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 616564 GTCAGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCCTTGGATGTGGTAGC 616515 >seq642 Length=1438033 Score = 107 bits (118), Expect = 6e-21 Identities = 88/104 (85%), Gaps = 5/104 (5%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AG--GTA--CTATCAA 397 ||||||||||||||||||||||||||| |||||||| |||| | || ||| | | ||| Sbjct 115750 AGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGTAAGCGACCAA 115691 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441 | ||| |||||||||||||| ||||||| ||| |||||||||| Sbjct 115690 AGGAACCATAACTGATTTAATTAGCCATTTGCATTTTCACTGTA 115647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510312351488