Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq30 239 4e-58 seq418 219 3e-52 seq602 210 2e-49 seq339 111 1e-19 seq92 111 1e-19 seq446 91.5 1e-13 >seq30 Length=8517879 Score = 239 bits (264), Expect = 4e-58 Identities = 612/915 (67%), Gaps = 24/915 (3%) Strand=Plus/Plus Query 61041 AGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTA 61100 ||| || || ||||| || || | || |||||||| || | ||||| |||| ||||| Sbjct 2591061 AGAAAACCCCCGTCGCTTTGTCATCTTTCCCATCGAATACCATGATATCTGGCAGATGTA 2591120 Query 61101 CAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAA 61160 || ||||| || || || || ||||| | |||||||| || | |||| ||||| | Sbjct 2591121 TAAGAAGGCCGAGGCCTCATTTTGGACAGCTGAGGAGGTGGACCTTTCCAGGGACATCCA 2591180 Query 61161 TGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTT 61217 |||||||| | | | | | || || | |||| || ||||| |||| || Sbjct 2591181 GCACTGGGAGGCCCCTGAAACCTGAGGAGAG--ATATTTTATATCCCATGTCCTGGCTTT 2591238 Query 61218 CTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGG 61276 ||| || || || || || || | ||| || || |||| || ||| || || || | Sbjct 2591239 CTTCGCAGCCAGTGATGGCATAGTGAGTGAAAACTTGGTGGAGCGGTTTAGC-CAAGAAG 2591297 Query 61277 TGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACT 61336 | || | | || || | |||||||| |||||||||||||||||||| || | |||| Sbjct 2591298 TTCAGATTACAGAAGCCTGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAACATACACT 2591357 Query 61337 CGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGAT 61396 | || ||||||||| | ||||||||||| ||| | | || || | ||| Sbjct 2591358 CTGAAATGTACAGTCTCCTCATCGATACTTACGTTAAAGATTCCAAAGAGAGGGAATTCC 2591417 Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATT 61456 | ||||| || || ||||| || || || ||| ||| || ||||||||||| || Sbjct 2591418 TCTTCAACGCTATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGTGTT 2591477 Query 61457 GGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 |||| | |||| | || || ||| ||| | | | || ||||| | || || Sbjct 2591478 GGAT--TGGGGACAAAGAAGCCACCCATGGAGAATGTGTAGTAGCCTTTGCAGCAGTTGA 2591535 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 || | || || ||| || ||||| | || || ||| | |||||||| ||||| || Sbjct 2591536 AGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCAAGAAACGAGGACTGAT 2591595 Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGA-TATCACGCGACGAGGGCATGCATTGTGATT 61633 ||||||||| || || |||||| | | || || | || ||||| | |||||||||| Sbjct 2591596 GCCCGGTCTTACATTTTCGAATGAGCTAATTAGCA-GAGATGAGGGACTCCATTGTGATT 2591654 Query 61634 TTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTG 61693 |||| ||| | ||||||| ||||| | || || |||||| || | || | | Sbjct 2591655 TTGCGTGTTTAATGTTCAAAC---ATCTGCTACATAAACCTTCGGAGCAGAGAGTCAGAG 2591711 Query 61694 AGAT-TGTTCGT-GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGT 61751 | || | | || | || || | || |||||||| || || || | || ||||| || Sbjct 2591712 AAATATAATTGTCAATGCTGTCAGGATAGAACAGGAGTTCCTCACAAAGGCCTTGCCAGT 2591771 Query 61752 CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCG 61811 |||||||| ||||| || ||||| |||||| |||||||| || |||||| | Sbjct 2591772 GAATCTCATCGGGATGAACTGCACTTTAATGAAGCAGTACATTGAATTCGTGGCCGACAG 2591831 Query 61812 TCTGTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAACCCATTTGATTT 61868 || | | || |||| | ||| || | | | | || | || |||||||| || Sbjct 2591832 ACTCATACTGGAGCTGGG-CTTCAGCAAGGTTTTCAGAGTA--GAGAATCCATTTGACTT 2591888 Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| | ||||| |||| ||||| || || || || |||| | ||||||| || Sbjct 2591889 TATGGAGAACATTTCATTGGAAGGCAAAACTAACTTCTTTAAGAAGAGACTAGGCGAGTA 2591948 Query 61929 TCAACGTTTGGGTGT 61943 ||| | ||||||| Sbjct 2591949 TCAGAGGATGGGTGT 2591963 >seq418 Length=2079112 Score = 219 bits (242), Expect = 3e-52 Identities = 599/904 (66%), Gaps = 34/904 (4%) Strand=Plus/Minus Query 61041 AGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTA 61100 ||| || || |||| || || | || |||||||| || | |||||||||| ||||| Sbjct 761969 AGAAAACCCCCGTCACTTTGTCATCTTTCCCATCGAATACCATGATATTTGGCAGATGTA 761910 Query 61101 CAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAA 61160 || || || || ||||| | ||||| | |||||||| || | ||||| ||||| | Sbjct 761909 TAAGAAAGCCGAGGCTTCACTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATCCA 761850 Query 61161 TGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTC 61218 |||||||| | | | | | || || | |||| || |||||| |||| ||| Sbjct 761849 GCACTGGGAGGCCCTGAAACCTGAGGAGAG--ATATTTTATATCCCATGTGCTGGCTTTC 761792 Query 61219 TTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGT 61277 || || || || || || || ||||| || || |||| || ||| || || || || Sbjct 761791 TTCGCGGCCAGTGATGGCATAGTGAATGAAAACTTTGTGGAGCGGTTTAGC-CAAGAAGT 761733 Query 61278 GCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTC 61337 || | | || || | |||||||| |||||||||||||||||||| || | ||||| Sbjct 761732 TCAGATTACAGAAGCCAGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAACATACACTC 761673 Query 61338 GGAGATGTACAGTGTTCTCATCGATACGTACA----TCAGGGAGCGGGCGGAACGTGAAC 61393 || ||||||||| | ||||||||||| || | || ||| || ||| Sbjct 761672 TGAAATGTACAGTCTCCTCATCGATACTTAAAGATTCCAAAGAGAGG---------GAAT 761622 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | ||||| || || ||||| || || || ||| ||| || ||||||||||| Sbjct 761621 TCCTCTTCAACGCTATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGC 761562 Query 61454 ATTGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 ||||| | |||| | || || | ||| |||| | || ||| | || Sbjct 761561 GCTGGAT--TGGGGACAAAGAAGCCACCTATGGAGAACATGTAGGAGCCTTTAGAGCAGT 761504 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 || || | || | ||| || ||||| | || || ||| | |||||||| ||| | Sbjct 761503 GGAAGGAATCTTCTATTCTGGTTCTTTTGCATCCATATTCTGGCTTAAGAAACGAGGATT 761444 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGA-TATCACGCGACGAGGGCATGCATTGTG 61630 ||||| ||||| || || ||| || | | || || | || ||||| | ||||||| Sbjct 761443 GATGCCTGGTCTTACATTTTCGAATAAGCTAATTAGCA-GAGATGAGGGACTCCATTGTG 761385 Query 61631 ATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGG 61690 ||||||| ||| | ||||||| ||||||| || || | |||| || | || Sbjct 761384 ATTTTGCGTGTTTAATGTTCAAAC---ATCTGGTACATAAACCTTTGGAGCAGAGAGTCA 761328 Query 61691 GTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCG 61750 | || || || | || || | || |||||||| || || || || || ||||| | Sbjct 761327 GAGAAATAATTGTCAATGCAGTCAGGATAGAACAGGAGTTCCTCACAGAGGCCTTGCCAG 761268 Query 61751 TCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACC 61810 | |||||||| ||||| || ||||| |||||| ||||||||||| || ||| Sbjct 761267 TGAATCTCATCGGGATGAACTGCACTTTAATGAAGCAGTACATTGAATTTGTGGCGGACA 761208 Query 61811 GTCTGTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAACCCATTTGATT 61867 | || | | || |||| | ||| || | | | | || | || |||||||| | Sbjct 761207 GACTTATACTGGAGCTGGG-CTTCAGCAAGGTTTTCAGAGTA--GAGAATCCATTTGACT 761151 Query 61868 TCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACT 61927 | ||||| | ||||| |||| ||||| || || || || ||||| | ||||| || | Sbjct 761150 TTATGGAGAACATTTCATTGGAAGGCAAAACTAACTTCTTTGAGAAGAGAGTAGGGGAGT 761091 Query 61928 ATCA 61931 |||| Sbjct 761090 ATCA 761087 >seq602 Length=1640730 Score = 210 bits (232), Expect = 2e-49 Identities = 589/887 (66%), Gaps = 23/887 (3%) Strand=Plus/Minus Query 61051 CGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCG 61110 ||||| || || | || |||||| | || | ||||| |||| ||||| || ||||| Sbjct 123041 CGTCGCTTTGTCATCTTTCCCATCAAATACCATGATATCTGGCAGATGTATAAGAAGGCC 122982 Query 61111 GAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG 61170 || || || || ||||| | |||||||| || | ||||| ||||| | |||||||| Sbjct 122981 GAGGCCTCATTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATCCAGCACTGGGAG 122922 Query 61171 --CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTT 61228 | | | | | || || | |||| || |||||| | || || || || || Sbjct 122921 GCCCTGAAACCTGAGGAGAG--ATATTTTATATCCCATGTGCTTGCTTTTTTCGCGGCCA 122864 Query 61229 CGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCG 61287 || || || || ||||| || || || | || ||| || || || || || | | Sbjct 122863 GTGATGGAATAGTGAATGAAAACTTGGTGAAGCGGTTTAGC-CAAGAAGTTCAGATTACA 122805 Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 || || | |||||||| |||||||||||||||||||| || | ||||| || |||||| Sbjct 122804 GAAGCCTGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAACATACACTCTGAAATGTAC 122745 Query 61348 AGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCC 61407 ||| | ||||||||||| ||||| | | || | ||| | ||||| || Sbjct 122744 AGTCTCCTCATCGATACTTACATTAAACATTCCAAAGAGAGGGAATTCCTCTTCAACGCT 122685 Query 61408 ATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGT 61467 || ||||| || || || ||| ||| || ||||||||||| ||||||| | Sbjct 122684 ATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCATTGGAT--TGGGG 122627 Query 61468 ACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525 |||| | || || | ||| ||| | | | || ||||| | || || || | || | Sbjct 122626 ACAAAGAAGCCACCTATGGAGAATGTGTAGTAGCCTTTGCAGCAGTGGAAGGAATCTTCT 122567 Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585 | | | || ||||| | || || ||| | |||||||| ||| | ||||| ||||| | Sbjct 122566 TTTCTAGTTCTTTTGCATCCATATTCTGGCTCAAGAAACGAGGATTGATGCCTGGTCTTA 122507 Query 61586 CCTTCAGCAATG-AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTG 61644 | || |||| | | || || | || ||||| | |||||||||||||| || || Sbjct 122506 CATTTTCGAATGCACTAATTAGCA-GAGATGAGGGACTCCATTGTGATTTTGC-GTGTTA 122449 Query 61645 CTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGT 61704 | ||||||| ||||| | || || |||||| || | || | || | | |||| Sbjct 122448 ATGTTCAAAC---ATCTGCTACATAAACCTTCGGAGCAGAGAGTCAGAGA-AATAATCGT 122393 Query 61705 -GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGG 61763 | || || | || |||||||| || || || || || ||||| | |||||||| Sbjct 122392 CAATGCTGTCAGGATAGAACAGGAGTTCCTTACAGAGGCCTTGCCAATAAATCTCATCGG 122333 Query 61764 CATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823 |||||||| ||||| |||||| | |||||| || || ||| | || | | || Sbjct 122332 GATGAATTGCACTTTAATGAAGCAGTACACTGAATTCGTGGCGGACAGACTTATACTGGA 122273 Query 61824 TTTGGGTATGAAGCGGATCTATAATACGA-AAAACCCATTTGATTTCATGGACATGATTT 61882 |||| | ||| | | | | | | | || |||||||| || ||||| | |||| Sbjct 122272 GCTGGG-CTTCAGCAAAGTTTTCAGAGTAGAGAATCCATTTGACTTTATGGAGAACATTT 122214 Query 61883 CGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929 | |||| ||||| || || || || ||| | |||||||| ||| Sbjct 122213 CATTGGAAGGCAAAACTAACTTCTTTAAGA---GAGTAGGCGAGTAT 122170 >seq339 Length=2552696 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| |||| ||| ||||||||||| ||||| ||||| |||| ||||| || Sbjct 2045395 GGTGTACTCTACAACTTCTGTGCACAGATTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 2045336 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| |||||||| | ||| ||||| | |||||| || ||||| ||||| || Sbjct 2045335 GTTGCTCTTCCGATTGCAAGAATCTTTGTAGAGCATGTAGGGGGTGCCCGTCTCTGTCTG 2045276 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 ||||| |||| ||||| ||| || Sbjct 2045275 AGACTCGATGACGGCGTACCAGAG 2045252 Score = 93.3 bits (102), Expect = 3e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 |||||| ||||| || ||||| ||||| ||||||| || | || || ||||| || | Sbjct 2043611 CATAAAGAGATCCGGGATCCAAAGGGCAAAGAAGAGGTCCCTGGCCCGCTGCTCTTCCTT 2043552 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 || |||||| ||||| ||||||||||||||||| ||||||||||||||| || Sbjct 2043551 TCCTGTATTTTTCTTTAAGTCAAGGAACTCAAAGATGTCTAAATGCCATGGTTCCAGATA 2043492 Query 66460 GATGGCGAA 66468 || || || Sbjct 2043491 AATAGCAAA 2043483 >seq92 Length=5367877 Score = 111 bits (122), Expect = 1e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||| || ||||||||||| || | ||||| || |||||||| ||||| |||| Sbjct 3853360 TGGAACGCTTTAGTCAGGAGGTGCAGGTTCCAGAGGCACGCTGTTTCTATGGCTTTCAGA 3853419 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| |||||||| ||||| |||||||||||| | || || ||||| || ||||||| Sbjct 3853420 TTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTGCTAATAGATACCTATATCAGGG 3853479 Query 61376 A 61376 | Sbjct 3853480 A 3853480 >seq446 Length=2046506 Score = 91.5 bits (100), Expect = 1e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 || || || |||||||| |||||||||||||||||||| || | ||||| || |||||| Sbjct 489429 GAAGCCCGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAACATACACTCTGAAATGTAC 489488 Query 61348 AGTGTTCTCATCGATACGTACAT 61370 ||| | ||||||||||| ||||| Sbjct 489489 AGTCTCCTCATCGATACTTACAT 489511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397539882375920