Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq30 239 4e-58
seq418 219 3e-52
seq602 210 2e-49
seq339 111 1e-19
seq92 111 1e-19
seq446 91.5 1e-13
>seq30
Length=8517879
Score = 239 bits (264), Expect = 4e-58
Identities = 612/915 (67%), Gaps = 24/915 (3%)
Strand=Plus/Plus
Query 61041 AGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTA 61100
||| || || ||||| || || | || |||||||| || | ||||| |||| |||||
Sbjct 2591061 AGAAAACCCCCGTCGCTTTGTCATCTTTCCCATCGAATACCATGATATCTGGCAGATGTA 2591120
Query 61101 CAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAA 61160
|| ||||| || || || || ||||| | |||||||| || | |||| ||||| |
Sbjct 2591121 TAAGAAGGCCGAGGCCTCATTTTGGACAGCTGAGGAGGTGGACCTTTCCAGGGACATCCA 2591180
Query 61161 TGACTGGGAG---CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTT 61217
|||||||| | | | | | || || | |||| || ||||| |||| ||
Sbjct 2591181 GCACTGGGAGGCCCCTGAAACCTGAGGAGAG--ATATTTTATATCCCATGTCCTGGCTTT 2591238
Query 61218 CTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGG 61276
||| || || || || || || | ||| || || |||| || ||| || || || |
Sbjct 2591239 CTTCGCAGCCAGTGATGGCATAGTGAGTGAAAACTTGGTGGAGCGGTTTAGC-CAAGAAG 2591297
Query 61277 TGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACT 61336
| || | | || || | |||||||| |||||||||||||||||||| || | ||||
Sbjct 2591298 TTCAGATTACAGAAGCCTGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAACATACACT 2591357
Query 61337 CGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGAT 61396
| || ||||||||| | ||||||||||| ||| | | || || | |||
Sbjct 2591358 CTGAAATGTACAGTCTCCTCATCGATACTTACGTTAAAGATTCCAAAGAGAGGGAATTCC 2591417
Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATT 61456
| ||||| || || ||||| || || || ||| ||| || ||||||||||| ||
Sbjct 2591418 TCTTCAACGCTATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGTGTT 2591477
Query 61457 GGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514
|||| | |||| | || || ||| ||| | | | || ||||| | || ||
Sbjct 2591478 GGAT--TGGGGACAAAGAAGCCACCCATGGAGAATGTGTAGTAGCCTTTGCAGCAGTTGA 2591535
Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574
|| | || || ||| || ||||| | || || ||| | |||||||| ||||| ||
Sbjct 2591536 AGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCAAGAAACGAGGACTGAT 2591595
Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGA-TATCACGCGACGAGGGCATGCATTGTGATT 61633
||||||||| || || |||||| | | || || | || ||||| | ||||||||||
Sbjct 2591596 GCCCGGTCTTACATTTTCGAATGAGCTAATTAGCA-GAGATGAGGGACTCCATTGTGATT 2591654
Query 61634 TTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTG 61693
|||| ||| | ||||||| ||||| | || || |||||| || | || | |
Sbjct 2591655 TTGCGTGTTTAATGTTCAAAC---ATCTGCTACATAAACCTTCGGAGCAGAGAGTCAGAG 2591711
Query 61694 AGAT-TGTTCGT-GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGT 61751
| || | | || | || || | || |||||||| || || || | || ||||| ||
Sbjct 2591712 AAATATAATTGTCAATGCTGTCAGGATAGAACAGGAGTTCCTCACAAAGGCCTTGCCAGT 2591771
Query 61752 CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCG 61811
|||||||| ||||| || ||||| |||||| |||||||| || |||||| |
Sbjct 2591772 GAATCTCATCGGGATGAACTGCACTTTAATGAAGCAGTACATTGAATTCGTGGCCGACAG 2591831
Query 61812 TCTGTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAACCCATTTGATTT 61868
|| | | || |||| | ||| || | | | | || | || |||||||| ||
Sbjct 2591832 ACTCATACTGGAGCTGGG-CTTCAGCAAGGTTTTCAGAGTA--GAGAATCCATTTGACTT 2591888
Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928
||||| | ||||| |||| ||||| || || || || |||| | ||||||| ||
Sbjct 2591889 TATGGAGAACATTTCATTGGAAGGCAAAACTAACTTCTTTAAGAAGAGACTAGGCGAGTA 2591948
Query 61929 TCAACGTTTGGGTGT 61943
||| | |||||||
Sbjct 2591949 TCAGAGGATGGGTGT 2591963
>seq418
Length=2079112
Score = 219 bits (242), Expect = 3e-52
Identities = 599/904 (66%), Gaps = 34/904 (4%)
Strand=Plus/Minus
Query 61041 AGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTA 61100
||| || || |||| || || | || |||||||| || | |||||||||| |||||
Sbjct 761969 AGAAAACCCCCGTCACTTTGTCATCTTTCCCATCGAATACCATGATATTTGGCAGATGTA 761910
Query 61101 CAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAA 61160
|| || || || ||||| | ||||| | |||||||| || | ||||| ||||| |
Sbjct 761909 TAAGAAAGCCGAGGCTTCACTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATCCA 761850
Query 61161 TGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTC 61218
|||||||| | | | | | || || | |||| || |||||| |||| |||
Sbjct 761849 GCACTGGGAGGCCCTGAAACCTGAGGAGAG--ATATTTTATATCCCATGTGCTGGCTTTC 761792
Query 61219 TTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGT 61277
|| || || || || || || ||||| || || |||| || ||| || || || ||
Sbjct 761791 TTCGCGGCCAGTGATGGCATAGTGAATGAAAACTTTGTGGAGCGGTTTAGC-CAAGAAGT 761733
Query 61278 GCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTC 61337
|| | | || || | |||||||| |||||||||||||||||||| || | |||||
Sbjct 761732 TCAGATTACAGAAGCCAGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAACATACACTC 761673
Query 61338 GGAGATGTACAGTGTTCTCATCGATACGTACA----TCAGGGAGCGGGCGGAACGTGAAC 61393
|| ||||||||| | ||||||||||| || | || ||| || |||
Sbjct 761672 TGAAATGTACAGTCTCCTCATCGATACTTAAAGATTCCAAAGAGAGG---------GAAT 761622
Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453
| ||||| || || ||||| || || || ||| ||| || |||||||||||
Sbjct 761621 TCCTCTTCAACGCTATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGC 761562
Query 61454 ATTGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511
||||| | |||| | || || | ||| |||| | || ||| | ||
Sbjct 761561 GCTGGAT--TGGGGACAAAGAAGCCACCTATGGAGAACATGTAGGAGCCTTTAGAGCAGT 761504
Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571
|| || | || | ||| || ||||| | || || ||| | |||||||| ||| |
Sbjct 761503 GGAAGGAATCTTCTATTCTGGTTCTTTTGCATCCATATTCTGGCTTAAGAAACGAGGATT 761444
Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGA-TATCACGCGACGAGGGCATGCATTGTG 61630
||||| ||||| || || ||| || | | || || | || ||||| | |||||||
Sbjct 761443 GATGCCTGGTCTTACATTTTCGAATAAGCTAATTAGCA-GAGATGAGGGACTCCATTGTG 761385
Query 61631 ATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGG 61690
||||||| ||| | ||||||| ||||||| || || | |||| || | ||
Sbjct 761384 ATTTTGCGTGTTTAATGTTCAAAC---ATCTGGTACATAAACCTTTGGAGCAGAGAGTCA 761328
Query 61691 GTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCG 61750
| || || || | || || | || |||||||| || || || || || ||||| |
Sbjct 761327 GAGAAATAATTGTCAATGCAGTCAGGATAGAACAGGAGTTCCTCACAGAGGCCTTGCCAG 761268
Query 61751 TCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACC 61810
| |||||||| ||||| || ||||| |||||| ||||||||||| || |||
Sbjct 761267 TGAATCTCATCGGGATGAACTGCACTTTAATGAAGCAGTACATTGAATTTGTGGCGGACA 761208
Query 61811 GTCTGTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAACCCATTTGATT 61867
| || | | || |||| | ||| || | | | | || | || |||||||| |
Sbjct 761207 GACTTATACTGGAGCTGGG-CTTCAGCAAGGTTTTCAGAGTA--GAGAATCCATTTGACT 761151
Query 61868 TCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACT 61927
| ||||| | ||||| |||| ||||| || || || || ||||| | ||||| || |
Sbjct 761150 TTATGGAGAACATTTCATTGGAAGGCAAAACTAACTTCTTTGAGAAGAGAGTAGGGGAGT 761091
Query 61928 ATCA 61931
||||
Sbjct 761090 ATCA 761087
>seq602
Length=1640730
Score = 210 bits (232), Expect = 2e-49
Identities = 589/887 (66%), Gaps = 23/887 (3%)
Strand=Plus/Minus
Query 61051 CGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCG 61110
||||| || || | || |||||| | || | ||||| |||| ||||| || |||||
Sbjct 123041 CGTCGCTTTGTCATCTTTCCCATCAAATACCATGATATCTGGCAGATGTATAAGAAGGCC 122982
Query 61111 GAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG 61170
|| || || || ||||| | |||||||| || | ||||| ||||| | ||||||||
Sbjct 122981 GAGGCCTCATTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATCCAGCACTGGGAG 122922
Query 61171 --CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTT 61228
| | | | | || || | |||| || |||||| | || || || || ||
Sbjct 122921 GCCCTGAAACCTGAGGAGAG--ATATTTTATATCCCATGTGCTTGCTTTTTTCGCGGCCA 122864
Query 61229 CGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCG 61287
|| || || || ||||| || || || | || ||| || || || || || | |
Sbjct 122863 GTGATGGAATAGTGAATGAAAACTTGGTGAAGCGGTTTAGC-CAAGAAGTTCAGATTACA 122805
Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347
|| || | |||||||| |||||||||||||||||||| || | ||||| || ||||||
Sbjct 122804 GAAGCCTGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAACATACACTCTGAAATGTAC 122745
Query 61348 AGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCC 61407
||| | ||||||||||| ||||| | | || | ||| | ||||| ||
Sbjct 122744 AGTCTCCTCATCGATACTTACATTAAACATTCCAAAGAGAGGGAATTCCTCTTCAACGCT 122685
Query 61408 ATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGT 61467
|| ||||| || || || ||| ||| || ||||||||||| ||||||| |
Sbjct 122684 ATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCATTGGAT--TGGGG 122627
Query 61468 ACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525
|||| | || || | ||| ||| | | | || ||||| | || || || | || |
Sbjct 122626 ACAAAGAAGCCACCTATGGAGAATGTGTAGTAGCCTTTGCAGCAGTGGAAGGAATCTTCT 122567
Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585
| | | || ||||| | || || ||| | |||||||| ||| | ||||| ||||| |
Sbjct 122566 TTTCTAGTTCTTTTGCATCCATATTCTGGCTCAAGAAACGAGGATTGATGCCTGGTCTTA 122507
Query 61586 CCTTCAGCAATG-AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTG 61644
| || |||| | | || || | || ||||| | |||||||||||||| || ||
Sbjct 122506 CATTTTCGAATGCACTAATTAGCA-GAGATGAGGGACTCCATTGTGATTTTGC-GTGTTA 122449
Query 61645 CTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGT 61704
| ||||||| ||||| | || || |||||| || | || | || | | ||||
Sbjct 122448 ATGTTCAAAC---ATCTGCTACATAAACCTTCGGAGCAGAGAGTCAGAGA-AATAATCGT 122393
Query 61705 -GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGG 61763
| || || | || |||||||| || || || || || ||||| | ||||||||
Sbjct 122392 CAATGCTGTCAGGATAGAACAGGAGTTCCTTACAGAGGCCTTGCCAATAAATCTCATCGG 122333
Query 61764 CATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823
|||||||| ||||| |||||| | |||||| || || ||| | || | | ||
Sbjct 122332 GATGAATTGCACTTTAATGAAGCAGTACACTGAATTCGTGGCGGACAGACTTATACTGGA 122273
Query 61824 TTTGGGTATGAAGCGGATCTATAATACGA-AAAACCCATTTGATTTCATGGACATGATTT 61882
|||| | ||| | | | | | | | || |||||||| || ||||| | ||||
Sbjct 122272 GCTGGG-CTTCAGCAAAGTTTTCAGAGTAGAGAATCCATTTGACTTTATGGAGAACATTT 122214
Query 61883 CGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929
| |||| ||||| || || || || ||| | |||||||| |||
Sbjct 122213 CATTGGAAGGCAAAACTAACTTCTTTAAGA---GAGTAGGCGAGTAT 122170
>seq339
Length=2552696
Score = 111 bits (122), Expect = 1e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||| ||||| |||| ||| ||||||||||| ||||| ||||| |||| ||||| ||
Sbjct 2045395 GGTGTACTCTACAACTTCTGTGCACAGATTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 2045336
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| |||||||| | ||| ||||| | |||||| || ||||| ||||| ||
Sbjct 2045335 GTTGCTCTTCCGATTGCAAGAATCTTTGTAGAGCATGTAGGGGGTGCCCGTCTCTGTCTG 2045276
Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192
||||| |||| ||||| ||| ||
Sbjct 2045275 AGACTCGATGACGGCGTACCAGAG 2045252
Score = 93.3 bits (102), Expect = 3e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
|||||| ||||| || ||||| ||||| ||||||| || | || || ||||| || |
Sbjct 2043611 CATAAAGAGATCCGGGATCCAAAGGGCAAAGAAGAGGTCCCTGGCCCGCTGCTCTTCCTT 2043552
Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459
|| |||||| ||||| ||||||||||||||||| ||||||||||||||| ||
Sbjct 2043551 TCCTGTATTTTTCTTTAAGTCAAGGAACTCAAAGATGTCTAAATGCCATGGTTCCAGATA 2043492
Query 66460 GATGGCGAA 66468
|| || ||
Sbjct 2043491 AATAGCAAA 2043483
>seq92
Length=5367877
Score = 111 bits (122), Expect = 1e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
||||||| || ||||||||||| || | ||||| || |||||||| ||||| ||||
Sbjct 3853360 TGGAACGCTTTAGTCAGGAGGTGCAGGTTCCAGAGGCACGCTGTTTCTATGGCTTTCAGA 3853419
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375
|| ||| |||||||| ||||| |||||||||||| | || || ||||| || |||||||
Sbjct 3853420 TTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTGCTAATAGATACCTATATCAGGG 3853479
Query 61376 A 61376
|
Sbjct 3853480 A 3853480
>seq446
Length=2046506
Score = 91.5 bits (100), Expect = 1e-13
Identities = 70/83 (84%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347
|| || || |||||||| |||||||||||||||||||| || | ||||| || ||||||
Sbjct 489429 GAAGCCCGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAACATACACTCTGAAATGTAC 489488
Query 61348 AGTGTTCTCATCGATACGTACAT 61370
||| | ||||||||||| |||||
Sbjct 489489 AGTCTCCTCATCGATACTTACAT 489511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397539882375920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |