Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq5846 123 4e-26
seq1744 102 1e-19
seq30186 93.3 6e-17
>seq5846
Length=143565
Score = 123 bits (136), Expect = 4e-26
Identities = 166/226 (73%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||| || ||||| |||| | | |||||| |||||| |
Sbjct 111269 GTACAAAGGGCAGGGACTTAATCAGTGCAAGCTTC-TGACCCACACTTACTGGGAATT-C 111212
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119
||| | | | || ||| ||||| | ||||||||||| | || || | | ||
Sbjct 111211 CTCACTCATGGGGAATAATGGCAATCCCCCATCCCCATCACAAATGGGATCCAATGGGTT 111152
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| |||| | || ||| | || || ||| || |||||||||||||||
Sbjct 111151 ACCCGCGCCTGCCAGCGTAGGCTAGGCACACGCTGAGCCAGTCGGTGTAGCGCGCGTGCA 111092
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225
|||| | ||||||||||||||||||||||||||| || ||||| ||
Sbjct 111091 GCCCCGGACATCTAAGGGCATCACAGACCTGTTACTG-CTCAATCT 111047
>seq1744
Length=308554
Score = 102 bits (112), Expect = 1e-19
Identities = 166/232 (72%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 5 AAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCG 64
||||||||||||| || ||| | | | ||| | ||| || || ||| |||||||| | |
Sbjct 65145 AAAGGGCAGGGACTTAATCACCACAAACTT-AGGACCTGCACTCACTGGGAATTTCTT-G 65088
Query 65 TTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATTACCC 123
|| | | || ||||||||| |||||||||||| || || || | |||||
Sbjct 65087 TTCATGGGCAGTAATTGCAATCCCGGGTCCCCATCACGAATGGTGTTCCATGGGTTACCG 65028
Query 124 GGACCTGTCGGCCAAGGTGATAG--ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGC 181
| |||| ||| | || ||| || | ||| || ||||||| | |||||| ||
Sbjct 65027 GAGCCTGCTGGCGTA--TGGTAGGCACACACTGAGCCCACCAGTGTATCTTGCGTGCAGC 64970
Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|| |||| |||||||||||||||||||||||||||| ||| || |||||
Sbjct 64969 CCCAAACAGCTAAGGGCATCACAGACCTGTTATTGCC-CAATCTCGGGTGGC 64919
>seq30186
Length=3415
Score = 93.3 bits (102), Expect = 6e-17
Identities = 84/103 (82%), Gaps = 2/103 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||| |||
Sbjct 1426 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAA-TTC 1369
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103
|||||| | | || ||||||||| |||||||||||||
Sbjct 1368 CTCGTTCATGGGGAATAATTGCAATCCCTGATCCCCATCACGA 1326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751583276145
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |