Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq5846 123 4e-26 seq1744 102 1e-19 seq30186 93.3 6e-17 >seq5846 Length=143565 Score = 123 bits (136), Expect = 4e-26 Identities = 166/226 (73%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||| || ||||| |||| | | |||||| |||||| | Sbjct 111269 GTACAAAGGGCAGGGACTTAATCAGTGCAAGCTTC-TGACCCACACTTACTGGGAATT-C 111212 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 ||| | | | || ||| ||||| | ||||||||||| | || || | | || Sbjct 111211 CTCACTCATGGGGAATAATGGCAATCCCCCATCCCCATCACAAATGGGATCCAATGGGTT 111152 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| | || ||| | || || ||| || ||||||||||||||| Sbjct 111151 ACCCGCGCCTGCCAGCGTAGGCTAGGCACACGCTGAGCCAGTCGGTGTAGCGCGCGTGCA 111092 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||| | ||||||||||||||||||||||||||| || ||||| || Sbjct 111091 GCCCCGGACATCTAAGGGCATCACAGACCTGTTACTG-CTCAATCT 111047 >seq1744 Length=308554 Score = 102 bits (112), Expect = 1e-19 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 5 AAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCG 64 ||||||||||||| || ||| | | | ||| | ||| || || ||| |||||||| | | Sbjct 65145 AAAGGGCAGGGACTTAATCACCACAAACTT-AGGACCTGCACTCACTGGGAATTTCTT-G 65088 Query 65 TTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATTACCC 123 || | | || ||||||||| |||||||||||| || || || | ||||| Sbjct 65087 TTCATGGGCAGTAATTGCAATCCCGGGTCCCCATCACGAATGGTGTTCCATGGGTTACCG 65028 Query 124 GGACCTGTCGGCCAAGGTGATAG--ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGC 181 | |||| ||| | || ||| || | ||| || ||||||| | |||||| || Sbjct 65027 GAGCCTGCTGGCGTA--TGGTAGGCACACACTGAGCCCACCAGTGTATCTTGCGTGCAGC 64970 Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 || |||| |||||||||||||||||||||||||||| ||| || ||||| Sbjct 64969 CCCAAACAGCTAAGGGCATCACAGACCTGTTATTGCC-CAATCTCGGGTGGC 64919 >seq30186 Length=3415 Score = 93.3 bits (102), Expect = 6e-17 Identities = 84/103 (82%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||| ||| Sbjct 1426 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAA-TTC 1369 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 |||||| | | || ||||||||| ||||||||||||| Sbjct 1368 CTCGTTCATGGGGAATAATTGCAATCCCTGATCCCCATCACGA 1326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751583276145