Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq5846 226 5e-57 seq15769 109 9e-22 seq3237 96.9 6e-18 seq11554 95.1 2e-17 seq1744 91.5 2e-16 >seq5846 Length=143565 Score = 226 bits (250), Expect = 5e-57 Identities = 204/251 (81%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||| ||||||||||||||| |||| | ||||||||||||||||||||||||||| ||| | Sbjct 111111 GTCGGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTACTGC-T 111053 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | | ||| | ||| | ||||||||||||||| | | || ||| | Sbjct 111052 CAATCT-CGGGTAACTGAACACCACTCGTCCCTCTAAGAAGCTGGAGGACGCCGACCGCT 110994 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 110993 CGGGGGTCGTGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 110934 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 110933 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATGGAATCGAGAAAGAGCT 110874 Query 248 ATCAATCTGTC 258 |||| |||||| Sbjct 110873 ATCAGTCTGTC 110863 >seq15769 Length=45041 Score = 109 bits (120), Expect = 9e-22 Identities = 177/251 (71%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 || ||||||| || ||| |||| | || ||||||||||| |||||||||||| || Sbjct 3252 GTTAGTGTAGTATGCATGCAAACCAGGATATTTAAGGGCATCAGAGACCTGTTATTTGCT 3193 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC---AGCCACCAAC--CA 129 ||| | |||||| | ||| | |||||||||||||| || || || | Sbjct 3192 TAAATCTTGGGTGGCTGAACACCACTTGTCCCTCTAAGAAGTTGGAAGATGCCCACTTCT 3133 Query 130 TAGTCGATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | || ||| ||||| | | |||| || ||||| ||||||||||||| Sbjct 3132 TGGGGGCTGAATAACTAAGTAGCATGCCAGAGTCTTGTGTGTTATTAGAATTAACCAGAC 3073 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||| || |||||||||||| ||| ||| |||||| ||||||||| || || | || Sbjct 3072 AAATTGCTTTACCAACTAAGAATGGCTATG-ACCACCCCCCATAGAACTGAGGAACATCT 3014 Query 248 ATCAATCTGTC 258 |||| |||||| Sbjct 3013 ATCAGTCTGTC 3003 >seq3237 Length=215973 Score = 96.9 bits (106), Expect = 6e-18 Identities = 156/219 (71%), Gaps = 14/219 (6%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| ||||| ||| | |||||||||| |||||||||||||||||| || Sbjct 37876 GTCAGTGTAGCTTGCGTGTAGCCGTGGACATCTAAGGTAATCACAGACCTGTTATTG-CT 37934 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAAC---- 127 ||| | || |||||| | |||| | ||||||||||||| | | | ||||| Sbjct 37935 CAATC-TCGGGTGGCTGAAGGCCACTTGTCCCTCTAAGAAGTTGGAGGACGCCAACTGCT 37993 Query 128 CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || | ||| | | |||||| | || |||| || ||||| ||||||||| |||| Sbjct 37994 CAGCGGTTATGTAAC-AGTTAGCATGCTAGAGTCTTATTTGTTATTGGAATTAACTAGAC 38052 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCAC 226 | || |||| ||||||| || |||| |||||| Sbjct 38053 AGATTGCTCC----ACTAAGATAAGCTGTGCAACACCAC 38087 >seq11554 Length=73183 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/116 (78%), Gaps = 7/116 (6%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| |||| ||| ||||||||||||||||| ||||| | Sbjct 2299 CTAGTTAGCATGCCAGAGTCTCATTCGGTATAGGAATTAACCAGACAAACGTTTCCACTA 2240 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 | ||||| ||||| ||||||||| ||||||||||||| |||||||| |||| Sbjct 2239 ATTAAGA------ATGCA-CACCACCCACAGAATCAAGAAAGGGCTATCAACCTGT 2191 >seq1744 Length=308554 Score = 91.5 bits (100), Expect = 2e-16 Identities = 81/99 (82%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||| | |||||| |||| |||| |||||||||||||||||||||||||||| || Sbjct 64989 CAGTGTATCTTGCGTGCAGCCCCAAACAGCTAAGGGCATCACAGACCTGTTATTGCC-CA 64931 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 | | || |||||| | |||| | |||| ||||||||| Sbjct 64930 ATC-TCGGGTGGCTGAATGCCATTTGTCCTTCTAAGAAG 64893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796358450043