Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq5846 226 5e-57
seq15769 109 9e-22
seq3237 96.9 6e-18
seq11554 95.1 2e-17
seq1744 91.5 2e-16
>seq5846
Length=143565
Score = 226 bits (250), Expect = 5e-57
Identities = 204/251 (81%), Gaps = 9/251 (4%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||| ||||||||||||||| |||| | ||||||||||||||||||||||||||| ||| |
Sbjct 111111 GTCGGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTACTGC-T 111053
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130
||| || | | ||| | ||| | ||||||||||||||| | | || ||| |
Sbjct 111052 CAATCT-CGGGTAACTGAACACCACTCGTCCCTCTAAGAAGCTGGAGGACGCCGACCGCT 110994
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | | | ||| |||||| | | |||||||||||||||||||||||||||||
Sbjct 110993 CGGGGGTCGTGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 110934
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 110933 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATGGAATCGAGAAAGAGCT 110874
Query 248 ATCAATCTGTC 258
|||| ||||||
Sbjct 110873 ATCAGTCTGTC 110863
>seq15769
Length=45041
Score = 109 bits (120), Expect = 9e-22
Identities = 177/251 (71%), Gaps = 8/251 (3%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|| ||||||| || ||| |||| | || ||||||||||| |||||||||||| ||
Sbjct 3252 GTTAGTGTAGTATGCATGCAAACCAGGATATTTAAGGGCATCAGAGACCTGTTATTTGCT 3193
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC---AGCCACCAAC--CA 129
||| | |||||| | ||| | |||||||||||||| || || || |
Sbjct 3192 TAAATCTTGGGTGGCTGAACACCACTTGTCCCTCTAAGAAGTTGGAAGATGCCCACTTCT 3133
Query 130 TAGTCGATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | || ||| ||||| | | |||| || ||||| |||||||||||||
Sbjct 3132 TGGGGGCTGAATAACTAAGTAGCATGCCAGAGTCTTGTGTGTTATTAGAATTAACCAGAC 3073
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
|||| || |||||||||||| ||| ||| |||||| ||||||||| || || | ||
Sbjct 3072 AAATTGCTTTACCAACTAAGAATGGCTATG-ACCACCCCCCATAGAACTGAGGAACATCT 3014
Query 248 ATCAATCTGTC 258
|||| ||||||
Sbjct 3013 ATCAGTCTGTC 3003
>seq3237
Length=215973
Score = 96.9 bits (106), Expect = 6e-18
Identities = 156/219 (71%), Gaps = 14/219 (6%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||| ||||| ||| | |||||||||| |||||||||||||||||| ||
Sbjct 37876 GTCAGTGTAGCTTGCGTGTAGCCGTGGACATCTAAGGTAATCACAGACCTGTTATTG-CT 37934
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAAC---- 127
||| | || |||||| | |||| | ||||||||||||| | | | |||||
Sbjct 37935 CAATC-TCGGGTGGCTGAAGGCCACTTGTCCCTCTAAGAAGTTGGAGGACGCCAACTGCT 37993
Query 128 CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
|| | ||| | | |||||| | || |||| || ||||| ||||||||| ||||
Sbjct 37994 CAGCGGTTATGTAAC-AGTTAGCATGCTAGAGTCTTATTTGTTATTGGAATTAACTAGAC 38052
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCAC 226
| || |||| ||||||| || |||| ||||||
Sbjct 38053 AGATTGCTCC----ACTAAGATAAGCTGTGCAACACCAC 38087
>seq11554
Length=73183
Score = 95.1 bits (104), Expect = 2e-17
Identities = 91/116 (78%), Gaps = 7/116 (6%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | ||||| |||| ||| ||||||||||||||||| ||||| |
Sbjct 2299 CTAGTTAGCATGCCAGAGTCTCATTCGGTATAGGAATTAACCAGACAAACGTTTCCACTA 2240
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257
| ||||| ||||| ||||||||| ||||||||||||| |||||||| ||||
Sbjct 2239 ATTAAGA------ATGCA-CACCACCCACAGAATCAAGAAAGGGCTATCAACCTGT 2191
>seq1744
Length=308554
Score = 91.5 bits (100), Expect = 2e-16
Identities = 81/99 (82%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
||||||| | |||||| |||| |||| |||||||||||||||||||||||||||| ||
Sbjct 64989 CAGTGTATCTTGCGTGCAGCCCCAAACAGCTAAGGGCATCACAGACCTGTTATTGCC-CA 64931
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115
| | || |||||| | |||| | |||| |||||||||
Sbjct 64930 ATC-TCGGGTGGCTGAATGCCATTTGTCCTTCTAAGAAG 64893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796358450043
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |