Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq5773 320 3e-85 seq10005 282 7e-74 seq3401 219 7e-55 seq33370 206 5e-51 seq4695 107 3e-21 >seq5773 Length=144844 Score = 320 bits (354), Expect = 3e-85 Identities = 248/294 (84%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||| ||||||||||||||||||| Sbjct 126918 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTACGGTAAAACTAACCTGTCTC 126859 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 126858 ACGACGGTCTAATCCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTCGGTG 126799 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 126798 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCTAAAAGCGACGTCGCTA 126739 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||| ||| ||||||||||||||||||||| ||||||||||||| |||||| || Sbjct 126738 TGAACGCTGGGCCGCCACAAGCCAGTTATCCCTGGGGTAACTTTTCTGACACCTCCTGCT 126679 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | || | |||||| | ||||| | |||||| ||| ||||||| Sbjct 126678 TAAAACCCCAAAGGTCAGAAGGATTGTGAGGCCCCGCTTTCACGGTCTGTATTC 126625 >seq10005 Length=87492 Score = 282 bits (312), Expect = 7e-74 Identities = 240/294 (82%), Gaps = 5/294 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||| | | | |||||||| ||| || ||||||||||||||||||||||||||||| Sbjct 67617 TACTGAACAGGATTACCAT---GGCAACA--CATCAGTAGGGTAAAACTAACCTGTCTCA 67671 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 | |||||||||||||||| | |||||| |||||||||||||||||||||||| | Sbjct 67672 CAATAGTCTAAACCCAGCTCATGATCCCTACTAGTGGGTGAACAATCCAACGCTTGGTAA 67731 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||| | ||| |||||||||||||| || ||||||| Sbjct 67732 ATTCTGCTTCATAATGATAGGAAGAGCCAATATCAAAGGATCAAAAAGCGACATCGCTAT 67791 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||| |||||| |||||||||||||||||||||||||||||||||| |||||| || | Sbjct 67792 GAACACTTGGCCCCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTT 67851 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||| ||| || | ||||||| |||| | |||||| ||| ||||| || Sbjct 67852 AAAACCCCGAAGGTCAGAAGGATCCTGAGGCTCCGCTTTCACGGTCTGTATACA 67905 >seq3401 Length=209510 Score = 219 bits (242), Expect = 7e-55 Identities = 228/297 (77%), Gaps = 3/297 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||| | | |||||||| | | || ||||||||||||| ||||| ||||||||| Sbjct 59880 TACTAAACAGGATTACCATGGCAACAACACATCATCAGTAGGGTGAAACTCACCTGTCTC 59939 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||| || ||||||||||||||||| |||||||||||||||||||| |||| Sbjct 59940 ACGACGGAGAAATCCCAGCTCACGTTCCCTGTTAGTGGGTGAACAATCCAATGCTTGGTA 59999 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||| |||||| |||||||||||||| || | ||||| ||||||| | |||||| Sbjct 60000 AATTGTGCTTCACAATGATAGGAAGAGCTAACGGCAAAGGACGGAAAAGCAGCATCGCTA 60059 Query 180 TGAACGCTTGGCTGCCACAAGCCAGT--TATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||| |||| || ||||| | |||| ||| ||| |||||||||||||| |||||| Sbjct 60060 TGAATGCTTTGCCACCACAGGTCAGTTATATACCTCTGGTAACTTTTCTGACACCTCCTA 60119 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | | ||| | | || | ||||||| ||||| |||||||| || |||||||| Sbjct 60120 CTTAAAACTCAAAAGGTCAGGAGGATCGTGAGGCCCCACTTTCACAGTCTGTATTCA 60176 >seq33370 Length=1981 Score = 206 bits (228), Expect = 5e-51 Identities = 159/189 (84%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164 |||||| |||| || ||||||||| |||||||||||||||||||||||||| |||| Sbjct 1325 ATCCAATGCTTGGTGACTTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGGTCAA 1384 Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1385 AAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 1444 Query 225 CTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGG 284 ||| |||||| || | ||| | | || | |||||||| ||||| | |||||| || Sbjct 1445 CTGACACCTCCTGCTTAAAACCCCAAAGGTCGGAAGGATCGTGAGGCCCCGCTTTCACGG 1504 Query 285 TTTGTATTC 293 | ||||||| Sbjct 1505 TCTGTATTC 1513 >seq4695 Length=170368 Score = 107 bits (118), Expect = 3e-21 Identities = 131/173 (76%), Gaps = 8/173 (5%) Strand=Plus/Plus Query 56 TCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT 115 ||||| || || || | |||| ||||| || ||||||| ||||||||||||||| || Sbjct 4173 TCTCACGATGGCCTGATCCCACCTCACACTCT-TATTAGTAGGTGAACAATCCAACACTG 4231 Query 116 ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCA-ACGT 174 | |||||||| || || ||||||| || ||| ||||| |||||||| | || Sbjct 4232 GGTAAGGTCTGCTTC---ATAAT--GAAGAGCTGATATCTAAGGACTAAAAAGCAGAAGT 4286 Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 ||||||| | |||||| |||| ||||||||| |||||||||||||||| Sbjct 4287 -GCTATGAGCACTTGGCCAACACATTGCAGTTATCCTTGTGGTAACTTTTCTG 4338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853911257568