Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq5773 320 3e-85
seq10005 282 7e-74
seq3401 219 7e-55
seq33370 206 5e-51
seq4695 107 3e-21
>seq5773
Length=144844
Score = 320 bits (354), Expect = 3e-85
Identities = 248/294 (84%), Gaps = 1/294 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || ||||||||| |||||||||||||||||||
Sbjct 126918 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTACGGTAAAACTAACCTGTCTC 126859
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 126858 ACGACGGTCTAATCCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTCGGTG 126799
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 126798 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCTAAAAGCGACGTCGCTA 126739
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||| ||| ||||||||||||||||||||| ||||||||||||| |||||| ||
Sbjct 126738 TGAACGCTGGGCCGCCACAAGCCAGTTATCCCTGGGGTAACTTTTCTGACACCTCCTGCT 126679
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||| | | || | |||||| | ||||| | |||||| ||| |||||||
Sbjct 126678 TAAAACCCCAAAGGTCAGAAGGATTGTGAGGCCCCGCTTTCACGGTCTGTATTC 126625
>seq10005
Length=87492
Score = 282 bits (312), Expect = 7e-74
Identities = 240/294 (82%), Gaps = 5/294 (2%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||| | | | |||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 67617 TACTGAACAGGATTACCAT---GGCAACA--CATCAGTAGGGTAAAACTAACCTGTCTCA 67671
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
| |||||||||||||||| | |||||| |||||||||||||||||||||||| |
Sbjct 67672 CAATAGTCTAAACCCAGCTCATGATCCCTACTAGTGGGTGAACAATCCAACGCTTGGTAA 67731
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| ||||||||||||||| | ||| |||||||||||||| || |||||||
Sbjct 67732 ATTCTGCTTCATAATGATAGGAAGAGCCAATATCAAAGGATCAAAAAGCGACATCGCTAT 67791
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
|||| |||||| |||||||||||||||||||||||||||||||||| |||||| || |
Sbjct 67792 GAACACTTGGCCCCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTT 67851
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
||| ||| || | ||||||| |||| | |||||| ||| ||||| ||
Sbjct 67852 AAAACCCCGAAGGTCAGAAGGATCCTGAGGCTCCGCTTTCACGGTCTGTATACA 67905
>seq3401
Length=209510
Score = 219 bits (242), Expect = 7e-55
Identities = 228/297 (77%), Gaps = 3/297 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||||| | | |||||||| | | || ||||||||||||| ||||| |||||||||
Sbjct 59880 TACTAAACAGGATTACCATGGCAACAACACATCATCAGTAGGGTGAAACTCACCTGTCTC 59939
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||||| || ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 59940 ACGACGGAGAAATCCCAGCTCACGTTCCCTGTTAGTGGGTGAACAATCCAATGCTTGGTA 59999
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
|||| |||||| |||||||||||||| || | ||||| ||||||| | ||||||
Sbjct 60000 AATTGTGCTTCACAATGATAGGAAGAGCTAACGGCAAAGGACGGAAAAGCAGCATCGCTA 60059
Query 180 TGAACGCTTGGCTGCCACAAGCCAGT--TATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237
|||| |||| || ||||| | |||| ||| ||| |||||||||||||| ||||||
Sbjct 60060 TGAATGCTTTGCCACCACAGGTCAGTTATATACCTCTGGTAACTTTTCTGACACCTCCTA 60119
Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| | ||| | | || | ||||||| ||||| |||||||| || ||||||||
Sbjct 60120 CTTAAAACTCAAAAGGTCAGGAGGATCGTGAGGCCCCACTTTCACAGTCTGTATTCA 60176
>seq33370
Length=1981
Score = 206 bits (228), Expect = 5e-51
Identities = 159/189 (84%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164
|||||| |||| || ||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1325 ATCCAATGCTTGGTGACTTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGGTCAA 1384
Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1385 AAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 1444
Query 225 CTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGG 284
||| |||||| || | ||| | | || | |||||||| ||||| | |||||| ||
Sbjct 1445 CTGACACCTCCTGCTTAAAACCCCAAAGGTCGGAAGGATCGTGAGGCCCCGCTTTCACGG 1504
Query 285 TTTGTATTC 293
| |||||||
Sbjct 1505 TCTGTATTC 1513
>seq4695
Length=170368
Score = 107 bits (118), Expect = 3e-21
Identities = 131/173 (76%), Gaps = 8/173 (5%)
Strand=Plus/Plus
Query 56 TCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT 115
||||| || || || | |||| ||||| || ||||||| ||||||||||||||| ||
Sbjct 4173 TCTCACGATGGCCTGATCCCACCTCACACTCT-TATTAGTAGGTGAACAATCCAACACTG 4231
Query 116 ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCA-ACGT 174
| |||||||| || || ||||||| || ||| ||||| |||||||| | ||
Sbjct 4232 GGTAAGGTCTGCTTC---ATAAT--GAAGAGCTGATATCTAAGGACTAAAAAGCAGAAGT 4286
Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227
||||||| | |||||| |||| ||||||||| ||||||||||||||||
Sbjct 4287 -GCTATGAGCACTTGGCCAACACATTGCAGTTATCCTTGTGGTAACTTTTCTG 4338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 853911257568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |