Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq5846 138 2e-30
seq30186 104 4e-20
seq1744 93.3 8e-17
seq3237 73.4 7e-11
>seq5846
Length=143565
Score = 138 bits (152), Expect = 2e-30
Identities = 192/266 (72%), Gaps = 11/266 (4%)
Strand=Plus/Plus
Query 68 CCGGCTTCTTAGAGGGACTATCGGC--TCA---AGCCGATGGAAGTTTGAGGCAATAACA 122
|| ||||||||||||||| | || ||| | |||| | ||||| || |||||
Sbjct 111009 CCAGCTTCTTAGAGGGACGAGTGGTGTTCAGTTACCCGA-----GATTGAG-CAGTAACA 111062
Query 123 GGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGA 182
|||||||||||||||||||||| | |||| ||||||||||||||| ||| | || ||
Sbjct 111063 GGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACCGACTGGCTCAGCGT 111122
Query 183 GTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATA 242
|| | | ||| || || ||| |||||| | | | | | | ||| |||||||
Sbjct 111123 GTGCCTAGCCTACGCTGGCAGGCGCGGGTAACCCATTGGATCCCATTTGTGATGGGGATG 111182
Query 243 GAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACG 302
| | ||||| |||||| | | | | ||||||| || |||||| | | |||| ||| |
Sbjct 111183 GGGGATTGCCATTATTCCCCATGAGTGAGGAATTCCCAGTAAGTGTGGGTCAGAAGCTTG 111242
Query 303 CGTTGATTACGTCCCTGCCCTTTGTA 328
| |||||| ||||||||||||||||
Sbjct 111243 CACTGATTAAGTCCCTGCCCTTTGTA 111268
>seq30186
Length=3415
Score = 104 bits (114), Expect = 4e-20
Identities = 83/100 (83%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288
||||| ||||||| | |||||||||||| | | | |||||||||| || |||||| ||
Sbjct 1326 TCGTGATGGGGATCAGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGC 1385
Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| ||||| ||| |||||||||| ||||||||||||||||
Sbjct 1386 GGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTA 1425
>seq1744
Length=308554
Score = 93.3 bits (102), Expect = 8e-17
Identities = 178/256 (70%), Gaps = 5/256 (2%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
||||||||| |||| | ||| | |||| || | ||| ||||||||||||||||||
Sbjct 64893 CTTCTTAGAAGGACAAATGGCATTCAGCCACCCGA-GATTG-GGCAATAACAGGTCTGTG 64950
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||| |||| |||| |||||| | ||||||| | || | || | |
Sbjct 64951 ATGCCCTTAGCTGTTTGGGGCTGCACGCAAGATACACTGGTGGGCTCAGTGTGTGCCTAC 65010
Query 191 CCTTGGCCGGAAGG-TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
| | ||| | ||| || || | | || | || | ||||| |||||| | |||
Sbjct 65011 CATACGCCAGCAGGCTCCGGTAACCCATGGAACAC-CATTCGTGATGGGGACCCGGGATT 65069
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
||||||| ||| | | ||| || ||| || ||| || || ||| | || | | ||||
Sbjct 65070 GCAATTACTGCCCATGAACAAGAAATTCCCAGTGAGTGCAGGTCCTAAGTTTGTGGTGAT 65129
Query 310 TACGTCCCTGCCCTTT 325
|| |||||||||||||
Sbjct 65130 TAAGTCCCTGCCCTTT 65145
>seq3237
Length=215973
Score = 73.4 bits (80), Expect = 7e-11
Identities = 79/101 (78%), Gaps = 3/101 (3%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 37974 CTTCTTAGAGGGACAAGTGGCCTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 37917
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171
|| |||||||||| | ||| ||||| |||||||||||
Sbjct 37916 ATTACCTTAGATGTCCACGGCTACACGCAAGCTACACTGAC 37876
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946658173184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |