Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq5846 138 2e-30 seq30186 104 4e-20 seq1744 93.3 8e-17 seq3237 73.4 7e-11 >seq5846 Length=143565 Score = 138 bits (152), Expect = 2e-30 Identities = 192/266 (72%), Gaps = 11/266 (4%) Strand=Plus/Plus Query 68 CCGGCTTCTTAGAGGGACTATCGGC--TCA---AGCCGATGGAAGTTTGAGGCAATAACA 122 || ||||||||||||||| | || ||| | |||| | ||||| || ||||| Sbjct 111009 CCAGCTTCTTAGAGGGACGAGTGGTGTTCAGTTACCCGA-----GATTGAG-CAGTAACA 111062 Query 123 GGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGA 182 |||||||||||||||||||||| | |||| ||||||||||||||| ||| | || || Sbjct 111063 GGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACCGACTGGCTCAGCGT 111122 Query 183 GTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATA 242 || | | ||| || || ||| |||||| | | | | | | ||| ||||||| Sbjct 111123 GTGCCTAGCCTACGCTGGCAGGCGCGGGTAACCCATTGGATCCCATTTGTGATGGGGATG 111182 Query 243 GAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACG 302 | | ||||| |||||| | | | | ||||||| || |||||| | | |||| ||| | Sbjct 111183 GGGGATTGCCATTATTCCCCATGAGTGAGGAATTCCCAGTAAGTGTGGGTCAGAAGCTTG 111242 Query 303 CGTTGATTACGTCCCTGCCCTTTGTA 328 | |||||| |||||||||||||||| Sbjct 111243 CACTGATTAAGTCCCTGCCCTTTGTA 111268 >seq30186 Length=3415 Score = 104 bits (114), Expect = 4e-20 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| ||||||| | |||||||||||| | | | |||||||||| || |||||| || Sbjct 1326 TCGTGATGGGGATCAGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGC 1385 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| |||||||||| |||||||||||||||| Sbjct 1386 GGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTA 1425 >seq1744 Length=308554 Score = 93.3 bits (102), Expect = 8e-17 Identities = 178/256 (70%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||| |||| | ||| | |||| || | ||| |||||||||||||||||| Sbjct 64893 CTTCTTAGAAGGACAAATGGCATTCAGCCACCCGA-GATTG-GGCAATAACAGGTCTGTG 64950 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||| |||| |||| |||||| | ||||||| | || | || | | Sbjct 64951 ATGCCCTTAGCTGTTTGGGGCTGCACGCAAGATACACTGGTGGGCTCAGTGTGTGCCTAC 65010 Query 191 CCTTGGCCGGAAGG-TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 | | ||| | ||| || || | | || | || | ||||| |||||| | ||| Sbjct 65011 CATACGCCAGCAGGCTCCGGTAACCCATGGAACAC-CATTCGTGATGGGGACCCGGGATT 65069 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||| ||| | | ||| || ||| || ||| || || ||| | || | | |||| Sbjct 65070 GCAATTACTGCCCATGAACAAGAAATTCCCAGTGAGTGCAGGTCCTAAGTTTGTGGTGAT 65129 Query 310 TACGTCCCTGCCCTTT 325 || ||||||||||||| Sbjct 65130 TAAGTCCCTGCCCTTT 65145 >seq3237 Length=215973 Score = 73.4 bits (80), Expect = 7e-11 Identities = 79/101 (78%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 37974 CTTCTTAGAGGGACAAGTGGCCTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 37917 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 || |||||||||| | ||| ||||| ||||||||||| Sbjct 37916 ATTACCTTAGATGTCCACGGCTACACGCAAGCTACACTGAC 37876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946658173184