Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1525 208 6e-49
seq25410 127 2e-24
seq3603 107 2e-18
seq1670 95.1 1e-14
seq549 82.4 6e-11
>seq1525
Length=329219
Score = 208 bits (230), Expect = 6e-49
Identities = 603/914 (66%), Gaps = 17/914 (2%)
Strand=Plus/Plus
Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084
||||||| || || ||| || || || || | || || || || ||||| || |
Sbjct 304260 ATGAACCACTTCTGAAAGGAAACCCCCGCCGCTCTGTCTTCTTTCCTATCGAATACCGTG 304319
Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144
|| |||||| |||| || | || || ||||||| |||||||| |||||||| ||
Sbjct 304320 ATGTTTGGCAGATGTGTAAGCACGCTGAGGCTTCCTGCTGGACGGCTGAGGAGGTGGACC 304379
Query 61145 TGTCCAAAGACATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAA 61202
| ||| | ||||| | || |||| | | | | | || || ||||||||||
Sbjct 304380 TTTCCTAGGACATTCAGCACCGGGAAGCCCTGAAGCCTGAGGAGAG--ACATTTCATTTC 304437
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
||||| |||| |||| ||| || || || | || ||||| || | |||| ||
Sbjct 304438 GCATGTCCTGGCTTTCTCTGCAGCAAGTGATGGCGTAGTAAATGAAAACCTGGTGGAGCG 304497
Query 61263 T-TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321
|| || || || | || || |||| || ||| |||||| |||||||| |||||||
Sbjct 304498 GCTTAGCCAAGAAGCT-CAGATGACGGAAGCCCGTGATTTCTATGGCTTCCAAATTGCCA 304556
Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381
|||| || | || ||||| ||||| ||| | |||| || || ||| | | ||
Sbjct 304557 TGGAAAACATACATTCGGAAATGTATAGTCTCCTCAATGACACTTACGTTAAAGATTCCA 304616
Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441
||| | ||| | ||||| ||||| ||||| || || || ||| ||| || |
Sbjct 304617 AAGAAAGGGAATCTCTCTTCAACGCCATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAG 304676
Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCAT 61501
|||||||||| |||||| ||| |||||| | ||| ||||| | | || |
Sbjct 304677 ATTGGGCCTTGCGCTGGATCGAGGACACAGAGGCTACGTATGGAGAACGTGTCATAGCCT 304736
Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561
|||| | || || || | || || ||| || ||||| | || || ||| | ||||
Sbjct 304737 TTGCCGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGA 304796
Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGGC 61620
|||| ||||| |||||||| || || || ||||| | || || || | ||||||||
Sbjct 304797 AACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCA-GAGACGAGGGT 304855
Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG 61680
| || ||||| ||||| || | ||||||| | ||| | | || ||||||
Sbjct 304856 TTACACTGTGACTTTGCCTGCCTGATGTTCAAAC---ACCTGCTACACAAACCTTCGGAG 304912
Query 61681 GAGCGTGTGGGTGAGATTGTTCGTGAG-GCGGTAACTATCGAACAGGAATTTCTGACTGA 61739
|| | || || | | |||| || || || | | |||||||| || || ||
Sbjct 304913 CAGAGAGTCAAAGA-AATAATCGTCAGTGCAGTTAGGCTAGAACAGGAGCGCCTCACGGA 304971
Query 61740 CGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATT 61799
|| | | || |||||||| |||||||||| | ||| |||||| || ||||
Sbjct 304972 GGCCTCAACAGTGAAGCTCATCGGGATGAATTGTGCTTTGATGAAGCAGTACATCAAATT 305031
Query 61800 TGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC--GGATCTATAATACGAAAAAC 61857
| || ||| | || || | || ||||| | ||| || | | | | | ||||
Sbjct 305032 CCTGGCAGACAGACTTATGCTGGAGCTGGGT-TTTAGCAAGGTTTTCTGAGTAG-AAAAT 305089
Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGT 61917
|||||||| || ||||| | ||||| ||||| || ||||| || || || ||||| |
Sbjct 305090 CCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTTGAGAAGAGA 305149
Query 61918 GTAGGCGACTATCA 61931
|||||||| |||||
Sbjct 305150 GTAGGCGAGTATCA 305163
>seq25410
Length=10104
Score = 127 bits (140), Expect = 2e-24
Identities = 227/327 (69%), Gaps = 6/327 (2%)
Strand=Plus/Plus
Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086
||||| || || |||| || | || | || || | || || ||||| || | |||
Sbjct 9777 GAACCACTTCTGAAAGAAAACACCCGCCACTTTGTCATCTTTCCTATCGAATACCATGAT 9836
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
||||||| ||||| || || || || |||||||| ||||| | || ||||| || |
Sbjct 9837 ATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAGGTGGACCTT 9896
Query 61147 TCCAAAGACATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAAC 61204
||||| ||||| | ||||||| | | | | | || || | |||||||| |
Sbjct 9897 TCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTGAGGAGAG--ATATTTCATTTCGC 9954
Query 61205 ATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-T 61263
|||| |||| |||||||| || || || || || ||||| | || |||| || |
Sbjct 9955 ATGTTCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAGCTTGGTGGAGCGGT 10014
Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323
|| || || || || || | |||| || | ||||||||| |||||||| |||||||||
Sbjct 10015 TTAGC-CAAGAAGTTCAGATTACGGAAGCCCATTGTTTCTATGGCTTCCAAATTGCCATG 10073
Query 61324 GAGAATGTCCACTCGGAGATGTACAGT 61350
|| || |||| || || ||||| |||
Sbjct 10074 GAAAACATCCATTCTGAAATGTATAGT 10100
>seq3603
Length=202440
Score = 107 bits (118), Expect = 2e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||||||||| || ||||| |||||||| || ||||| || || || | ||||| ||
Sbjct 21179 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCTAGGTTCTGCTG 21120
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| ||||| || | ||| ||||| | ||||||||| || || ||||| ||
Sbjct 21119 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 21060
Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192
|||||||||||||| | ||||||
Sbjct 21059 AGACTCAATGATGGCATACCAAAG 21036
>seq1670
Length=315515
Score = 95.1 bits (104), Expect = 1e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
||||||||||| || | ||||| || |||||||| ||||| || ||| ||| || |||
Sbjct 209926 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAAAAT 209867
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
|| ||||| |||||||||||| | || || || || |||||||| ||
Sbjct 209866 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 209820
>seq549
Length=511996
Score = 82.4 bits (90), Expect = 6e-11
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345
|||| || ||||||||||| |||||||| ||||||||||| || |||| || || ||||
Sbjct 262542 CGGAAGCCCGTTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATCCATTCTGAAATGT 262483
Query 61346 ACAGTGTTCTCATCGATACGTACAT 61370
| ||| | ||||| || || |||||
Sbjct 262482 ATAGTCTCCTCATTGACACTTACAT 262458
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397290830871920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |