Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1525 208 6e-49 seq25410 127 2e-24 seq3603 107 2e-18 seq1670 95.1 1e-14 seq549 82.4 6e-11 >seq1525 Length=329219 Score = 208 bits (230), Expect = 6e-49 Identities = 603/914 (66%), Gaps = 17/914 (2%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| || || ||| || || || || | || || || || ||||| || | Sbjct 304260 ATGAACCACTTCTGAAAGGAAACCCCCGCCGCTCTGTCTTCTTTCCTATCGAATACCGTG 304319 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 || |||||| |||| || | || || ||||||| |||||||| |||||||| || Sbjct 304320 ATGTTTGGCAGATGTGTAAGCACGCTGAGGCTTCCTGCTGGACGGCTGAGGAGGTGGACC 304379 Query 61145 TGTCCAAAGACATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAA 61202 | ||| | ||||| | || |||| | | | | | || || |||||||||| Sbjct 304380 TTTCCTAGGACATTCAGCACCGGGAAGCCCTGAAGCCTGAGGAGAG--ACATTTCATTTC 304437 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||||| |||| |||| ||| || || || | || ||||| || | |||| || Sbjct 304438 GCATGTCCTGGCTTTCTCTGCAGCAAGTGATGGCGTAGTAAATGAAAACCTGGTGGAGCG 304497 Query 61263 T-TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 || || || || | || || |||| || ||| |||||| |||||||| ||||||| Sbjct 304498 GCTTAGCCAAGAAGCT-CAGATGACGGAAGCCCGTGATTTCTATGGCTTCCAAATTGCCA 304556 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 |||| || | || ||||| ||||| ||| | |||| || || ||| | | || Sbjct 304557 TGGAAAACATACATTCGGAAATGTATAGTCTCCTCAATGACACTTACGTTAAAGATTCCA 304616 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 ||| | ||| | ||||| ||||| ||||| || || || ||| ||| || | Sbjct 304617 AAGAAAGGGAATCTCTCTTCAACGCCATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAG 304676 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCAT 61501 |||||||||| |||||| ||| |||||| | ||| ||||| | | || | Sbjct 304677 ATTGGGCCTTGCGCTGGATCGAGGACACAGAGGCTACGTATGGAGAACGTGTCATAGCCT 304736 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 |||| | || || || | || || ||| || ||||| | || || ||| | |||| Sbjct 304737 TTGCCGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGA 304796 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGGC 61620 |||| ||||| |||||||| || || || ||||| | || || || | |||||||| Sbjct 304797 AACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCA-GAGACGAGGGT 304855 Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG 61680 | || ||||| ||||| || | ||||||| | ||| | | || |||||| Sbjct 304856 TTACACTGTGACTTTGCCTGCCTGATGTTCAAAC---ACCTGCTACACAAACCTTCGGAG 304912 Query 61681 GAGCGTGTGGGTGAGATTGTTCGTGAG-GCGGTAACTATCGAACAGGAATTTCTGACTGA 61739 || | || || | | |||| || || || | | |||||||| || || || Sbjct 304913 CAGAGAGTCAAAGA-AATAATCGTCAGTGCAGTTAGGCTAGAACAGGAGCGCCTCACGGA 304971 Query 61740 CGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATT 61799 || | | || |||||||| |||||||||| | ||| |||||| || |||| Sbjct 304972 GGCCTCAACAGTGAAGCTCATCGGGATGAATTGTGCTTTGATGAAGCAGTACATCAAATT 305031 Query 61800 TGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC--GGATCTATAATACGAAAAAC 61857 | || ||| | || || | || ||||| | ||| || | | | | | |||| Sbjct 305032 CCTGGCAGACAGACTTATGCTGGAGCTGGGT-TTTAGCAAGGTTTTCTGAGTAG-AAAAT 305089 Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGT 61917 |||||||| || ||||| | ||||| ||||| || ||||| || || || ||||| | Sbjct 305090 CCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTTGAGAAGAGA 305149 Query 61918 GTAGGCGACTATCA 61931 |||||||| ||||| Sbjct 305150 GTAGGCGAGTATCA 305163 >seq25410 Length=10104 Score = 127 bits (140), Expect = 2e-24 Identities = 227/327 (69%), Gaps = 6/327 (2%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || || |||| || | || | || || | || || ||||| || | ||| Sbjct 9777 GAACCACTTCTGAAAGAAAACACCCGCCACTTTGTCATCTTTCCTATCGAATACCATGAT 9836 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| ||||| || || || || |||||||| ||||| | || ||||| || | Sbjct 9837 ATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAGGTGGACCTT 9896 Query 61147 TCCAAAGACATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAAC 61204 ||||| ||||| | ||||||| | | | | | || || | |||||||| | Sbjct 9897 TCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTGAGGAGAG--ATATTTCATTTCGC 9954 Query 61205 ATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-T 61263 |||| |||| |||||||| || || || || || ||||| | || |||| || | Sbjct 9955 ATGTTCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAGCTTGGTGGAGCGGT 10014 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 || || || || || || | |||| || | ||||||||| |||||||| ||||||||| Sbjct 10015 TTAGC-CAAGAAGTTCAGATTACGGAAGCCCATTGTTTCTATGGCTTCCAAATTGCCATG 10073 Query 61324 GAGAATGTCCACTCGGAGATGTACAGT 61350 || || |||| || || ||||| ||| Sbjct 10074 GAAAACATCCATTCTGAAATGTATAGT 10100 >seq3603 Length=202440 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| |||||||| || ||||| || || || | ||||| || Sbjct 21179 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCTAGGTTCTGCTG 21120 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||||||||| || || ||||| || Sbjct 21119 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 21060 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 21059 AGACTCAATGATGGCATACCAAAG 21036 >seq1670 Length=315515 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| || ||| Sbjct 209926 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAAAAT 209867 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 209866 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 209820 >seq549 Length=511996 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 |||| || ||||||||||| |||||||| ||||||||||| || |||| || || |||| Sbjct 262542 CGGAAGCCCGTTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATCCATTCTGAAATGT 262483 Query 61346 ACAGTGTTCTCATCGATACGTACAT 61370 | ||| | ||||| || || ||||| Sbjct 262482 ATAGTCTCCTCATTGACACTTACAT 262458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397290830871920