Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq245116 372 8e-101 seq192693 322 1e-85 seq220038 271 2e-70 seq179099 255 2e-65 >seq245116 Length=542 Score = 372 bits (412), Expect = 8e-101 Identities = 318/387 (82%), Gaps = 4/387 (1%) Strand=Plus/Plus Query 15 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 74 |||| |||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 158 AAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCG 217 Query 75 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGG 134 |||||| ||||||||||||| ||| |||||||| | |||| | | ||||||| ||| || Sbjct 218 GAATTATTGGGCGTAAAGCGCGCGTAGGCGGTTTTTTAAG-CTGATGTGAAAGCCCACGG 276 Query 135 CTTAACCTGGGAATTGCATTTGTGACTG-CACGACTAGAGTGTGTCAGAGGGGGGTGGAA 193 || |||||||||| ||||| || |||| || | || |||| | |||||||||| ||| Sbjct 277 CTCAACCTGGGAACTGCATCTGATACTGGCAAG-CTTGAGTCTCGTAGAGGGGGGTAGAA 335 Query 194 TTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCC 253 ||||| ||||||| |||||||||||||| || |||||||| ||| |||||||||| ||| Sbjct 336 TTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTGGCGAAGGCGGCC 395 Query 254 CCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACC 313 |||||| || ||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 396 CCCTGGACGAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 455 Query 314 CTGGTAGTCCACGCCCTAAACGATATCAAC-TAGTTGTTGGGGATTTACTTCCTTGGTAA 372 ||||||||||||||| |||||||| || || | | |||| | || | | | | Sbjct 456 CTGGTAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTC 515 Query 373 CGTAGCTAACGCGTGAAGTTGACCGCC 399 || ||||||||||| |||| ||||||| Sbjct 516 CGGAGCTAACGCGTTAAGTCGACCGCC 542 >seq192693 Length=850 Score = 322 bits (356), Expect = 1e-85 Identities = 307/390 (79%), Gaps = 2/390 (1%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||||||| || |||| |||||||||||||||||||||||||||||||||||||| || Sbjct 452 TACCTGAGGAGGAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGC 511 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 ||||||| |||| ||||||||||||||| | ||| ||| || | | |||| | ||| Sbjct 512 AAGCGTTGTCCGGATTTACTGGGCGTAAAGGGAGCGTAGGTGGATATTTAAGTGGGATGT 571 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||| | ||||||||||||||| |||||| |||| | |||||||| ||| Sbjct 572 GAAATACTCGGGCTTAACCTGGGTGCTGCATTCCAAACTGGATATCTAGAGTGCAGAAGA 631 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || ||||||||||| ||||||| |||||||||| ||| || ||||||||||||| ||| Sbjct 632 GGAAAGTGGAATTCCATGTGTAGCGGTGAAATGCGCAGAGATATGGAGGAACACCAGTGG 691 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 ||||||| | |||| | ||||||||| ||| |||||||||||||| ||||||| Sbjct 692 CGAAGGCGACTTTCTGGTCTGTAACTGACGCTGATGTGCGAAAGCGTGGGGATCAAACAG 751 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTT-GGGGATTTAC 361 |||||||||||||||||||||||||| |||||||| ||| |||| |||| ||| | Sbjct 752 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTAGGGGGTTTCC 811 Query 362 -TTCCTTGGTAACGTAGCTAACGCGTGAAG 390 |||| || | ||||||||| | ||| Sbjct 812 GCCCCTTAGTGCTGCAGCTAACGCATTAAG 841 >seq220038 Length=663 Score = 271 bits (300), Expect = 2e-70 Identities = 255/321 (79%), Gaps = 8/321 (2%) Strand=Plus/Plus Query 21 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTA 80 |||||||||||||||||||||||||||||||||||||| | |||||| |||| ||| Sbjct 283 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTCCCGAGCGTTGTCCGGATTTA 342 Query 81 CTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAAC 140 ||||||||||| | ||||||||||| | ||| | || || ||| | |||| ||| Sbjct 343 TTGGGCGTAAAGGGAGCGCAGGCGGTCAGGAAAGTCTGGAGTAAAAGGCTATGGCTCAAC 402 Query 141 CTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGG---GTGGAATTCC 197 | | ||| | | |||| |||| ||||| |||| |||| |||||||||| Sbjct 403 CATAG-TGTGCTCTGGAAACTGTCTGACTTGAGTG---CAGAAGGGGAGAGTGGAATTCC 458 Query 198 ACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCG-AAGGCAGCCCCC 256 | ||||||| ||||||||||||||||| ||||||||||||| ||||| || || || | | Sbjct 459 ATGTGTAGCGGTGAAATGCGTAGATATATGGAGGAACACCAGTGGCGAAAAGCGGCTCTC 518 Query 257 TGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTG 316 ||| | |||||||||| | || |||||||||||| ||| ||||||||||||||||||| Sbjct 519 TGGTCTGTCACTGACGCTGAGGCTCGAAAGCGTGGGTAGCGAACAGGATTAGATACCCTG 578 Query 317 GTAGTCCACGCCCTAAACGAT 337 |||||||||||| |||||||| Sbjct 579 GTAGTCCACGCCGTAAACGAT 599 >seq179099 Length=1167 Score = 255 bits (282), Expect = 2e-65 Identities = 301/404 (75%), Gaps = 9/404 (2%) Strand=Plus/Minus Query 12 AATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAA 71 || |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 996 AAGAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTGT 937 Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCC 131 |||| ||| ||||||||||| | || ||| ||||| | | | ||| |||| Sbjct 936 CCGGATTTATTGGGCGTAAAGGGCTCGTAGGTGGTTGATCGCGTCGGAAGTGTAATCTTG 877 Query 132 GGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGG 191 |||||||||| | ||| || | || | |||| ||| | || || | ||| Sbjct 876 GGGCTTAACCCTGAGCGTGCTTTCGATACGGGTTGACTTGAGGAAGGTAGGGGAGAATGG 817 Query 192 AATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAG 251 |||||| ||| ||| ||| |||||| |||||| |||||||||||| |||||||||| | Sbjct 816 AATTCCTGGTGGAGCGGTGGAATGCGCAGATATCAGGAGGAACACCAGTGGCGAAGGCGG 757 Query 252 CCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATA 311 | ||||| |||||||| | | |||||||||||||||| |||||| ||||||| Sbjct 756 TTCTCTGGGCCTTTCCTGACGCTGAGGAGCGAAAGCGTGGGGAGCGAACAGGCTTAGATA 697 Query 312 CCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGG--GATT-TAC---TTCC 365 |||||||||||||||| |||||| | ||||| ||| ||| ||| || |||| Sbjct 696 CCCTGGTAGTCCACGCTGTAAACGGTGGGTACTAGGTGTGGGGTCCATTCCACGGGTTCC 637 Query 366 TTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | |||||||||||| | |||| ||||||||||| ||| Sbjct 636 ---GCGCCGTAGCTAACGCTTTAAGTACCCCGCCTGGGGAGTAC 596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1286148708000