Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq264128 488 2e-135 seq192934 342 2e-91 >seq264128 Length=505 Score = 488 bits (540), Expect = 2e-135 Identities = 343/385 (89%), Gaps = 5/385 (1%) Strand=Plus/Minus Query 116 CCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTC 175 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 505 CCCTCTAGAGATAGAGTTTTCCCCTTCGGGGGACAGAGTGACAGGTGGTGCATGGTTGTC 446 Query 176 GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTA 235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 445 GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTA 386 Query 236 GTTGCCATCATTAAGTT-GGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGT 294 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 385 GTTGCCATCATTAAGTTGGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAA-GT 327 Query 295 GGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAA-TGG 353 ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 326 GGGGATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATTGG 267 Query 354 ACAATACAAAG-GGCAGCGAAACCGCGAGGTCAAGCAAATC-CCATAAAGTTGTTCTCAG 411 | ||||| | | |||| | | || | ||||| |||| | |||| | |||||| Sbjct 266 TCGGTACAACGAGTTTGCGAGCCGGTGACGGCAAGCTAATCTCTGAAAAGCCGATCTCAG 207 Query 412 TTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCA 471 ||||||||| || |||||||||| || |||||| ||||||||||||||||| ||||| Sbjct 206 TTCGGATTGGAGGCTGCAACTCGCCTCCATGAAGTCGGAATCGCTAGTAATCGCGGATCA 147 Query 472 GCATGCTACGGTGAATACGTTCCCG 496 ||| || ||||||||||||||||| Sbjct 146 GCACGCCGCGGTGAATACGTTCCCG 122 >seq192934 Length=847 Score = 342 bits (378), Expect = 2e-91 Identities = 333/421 (79%), Gaps = 12/421 (3%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||| || Sbjct 412 TACGCTCGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGATTAT 353 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTC--TGACCCC 118 |||||||||||||| | |||||| |||||||||||| ||| | || |||| | Sbjct 352 GTGGTTTAATTCGATGATACGCGAGGAACCTTACCAAGACTTAA-ATGGGAATTGACAGC 294 Query 119 TCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178 | |||| |||||| |||| ||||| ||| | ||||| ||||||||||||||| Sbjct 293 TTTAGAAATAGAGCTTTC---TTCGG---ACAATTTTCAAGGTGCTGCATGGTTGTCGTC 240 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 |||||||| |||||| |||| |||||||||| |||||||||||||||| | ||||| Sbjct 239 AGCTCGTGCCGTGAGGTGTTAGGTTAAGTCCTGCAACGAGCGCAACCCCTGTCACTAGTT 180 Query 239 GCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGGTGGG 297 ||||||||| ||||||| |||||| ||||||| | ||| | |||||||||||| Sbjct 179 GCCATCATTCAGTTGGGGACTCTAGTGAGACTGCCTACG-CAAGTAGAGAGGAAGGTGGG 121 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || ||||||||||||||| | |||||| | |||||| |||||||| |||||||| | Sbjct 120 GATGACGTCAAATCATCACGGCCCTTACGTCTTGGGCCACACACGTAATACAATGGCCGG 61 Query 358 TACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGA 417 |||| |||||||| | || |||| || | ||||||| | |||| | |||||||||||| Sbjct 60 TACAGAGGGCAGCTACACAGCGATGTGATGCAAATCTC-GAAAGCCGGTCTCAGTTCGGA 2 Query 418 T 418 | Sbjct 1 T 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1499974920000