Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq192693 268 2e-69 seq220038 205 2e-50 seq179099 143 6e-32 seq245116 100 6e-19 >seq192693 Length=850 Score = 268 bits (296), Expect = 2e-69 Identities = 269/341 (79%), Gaps = 8/341 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||||||||||||| || | ||| |||||||| ||| | | |||||| |||| ||| Sbjct 424 CTTTACAATCCGAAGACCGTCAT-CACTCACGCGGCGTTGCC-GCATCAGGGTTTCCCCC 367 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 366 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAA 307 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| | ||||| |||||||| | | |||| ||||||||||||||||||| |||||||| Sbjct 306 TGTGGCCGATCACCCTCTCAGGTCGGCTACGCATCGTCGCCTTGGTGAGCCGTTACCTCA 247 Query 181 CCAACTAGCTAATCCGACCTAGGCT-CATCTGATAGCGCA--AGGCCCGAAGGTCCCCTG 237 ||||||||||||| |||| || | ||||| |||||| | | || | | | || Sbjct 246 CCAACTAGCTAATGCGACNCGGGGTCCATCTCATAGCGGATTACTCCTTTAATTGCTATG 187 Query 238 -CTTTCTCCCGTAGGA-CGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACT 295 | | | | || | | |||||||||||| | | |||| ||| | ||| |||| || Sbjct 186 CCATGCGGCACTACAATCTTATGCGGTATTAATCTTCCTTTCGGAAGGCTATTCCCCTCT 127 Query 296 ACCAGGCAGATT-CCTAGGCATTACTCACCCGTCCGCCGCT 335 | |||||| || || | | |||||||||||||||||||| Sbjct 126 ATGAGGCAGGTTACCCACGTGTTACTCACCCGTCCGCCGCT 86 >seq220038 Length=663 Score = 205 bits (226), Expect = 2e-50 Identities = 177/213 (83%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||| ||||||| |||||||| ||| |||||||| ||| || | |||| ||| || || Sbjct 211 CTTTACGATCCGAAAACCTTCTT-CACTCACGCGGCGTTG-CTCGGTCAGACTTCCGTCC 154 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA- 119 |||| | || |||||| ||||||||||||||||||||||||| |||||||||||| ||| Sbjct 153 ATTGCCGAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 94 Query 120 GTGTGACTGATCA-TCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCC-ATTACC 177 ||||| | ||||| |||||||| | | || | ||||||||||||||||||| ||||| Sbjct 93 GTGTGGCCGATCACCCCTCTCAGGTCGGCTATGTATCGTCGCCTTGGTGAGCCTTTTACC 34 Query 178 TCACCAACTAGCTAATCCGACCTAGGCTCATCT 210 |||||||||||||||| | || ||| ||||| Sbjct 33 TCACCAACTAGCTAATACAACGCAGGTCCATCT 1 >seq179099 Length=1167 Score = 143 bits (158), Expect = 6e-32 Identities = 112/131 (85%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| || || | | | |||||||| ||| ||| ||||||||| |||||| Sbjct 1039 TTTACAACCCGAAGGCCGTCATCC-CGCACGCGGCGTTG-CTGCATCAGGCTTCCGCCCA 1096 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| |||||||||||||||||||||||||||||||||||| |||| ||||||| ||| | Sbjct 1097 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAAT 1156 Query 122 GTGACTGATCA 132 ||| | | ||| Sbjct 1157 GTGGCCGGTCA 1167 >seq245116 Length=542 Score = 100 bits (110), Expect = 6e-19 Identities = 80/94 (85%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||| |||||||||||||| | ||| |||||||| ||| || ||||||||||||||| Sbjct 92 TTTACGATCCGAAGACCTTCAT-CACTCACGCGGCGTTG-CTCCGTCAGGCTTTCGCCCA 35 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGG 95 ||| || |||||| |||||||||||||||||| Sbjct 34 TTGCGGAAGATTCCCTACTGCTGCCTCCCGTAGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1069131060000