Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq192693 268 2e-69 seq179099 145 2e-32 seq220038 141 2e-31 >seq192693 Length=850 Score = 268 bits (296), Expect = 2e-69 Identities = 251/314 (80%), Gaps = 13/314 (4%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 392 GGCGTTGCCGCATCAGGGTTTCCCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 333 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| || Sbjct 332 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGATCACCCTCTCAGGTCGGCTACGCAT 273 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAAT-CGGCCGCGAGCCCATCTTTC 179 ||||| ||||||| || ||| ||||||||||| ||||| || | | | |||||| Sbjct 272 CGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATGCGACNCGGGGTCCATCTCAT 213 Query 180 AGC-GATAAATCTTTGGTCAAAGAATGATGCCAT---CCTCTGACA---TTATGCGGTAT 232 ||| ||| | || || || ||||||| | || ||| ||||||||||| Sbjct 212 AGCGGATTACTCCTT----TAATTGCTATGCCATGCGGCACT-ACAATCTTATGCGGTAT 158 Query 233 TAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCAC 292 || ||| |||| || | |||||| |||| ||||||||| | |||||||||||||| Sbjct 157 TAATCTTCCTTTCGGAAGGCTATTCCCCTCTATGAGGCAGGTTACCCACGTGTTACTCAC 98 Query 293 CCGTCCGCCACTAA 306 ||||||||| |||| Sbjct 97 CCGTCCGCCGCTAA 84 >seq179099 Length=1167 Score = 145 bits (160), Expect = 2e-32 Identities = 91/98 (93%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| ||||||||||| || | ||||||||||||||| ||||||||||||||||||||| Sbjct 1070 GGCGTTGCTGCATCAGGCTTCCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 1129 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCA 98 ||||||||||||| |||||||||||||||||||| ||| Sbjct 1130 GAGTCTGGGCCGTATCTCAGTCCCAATGTGGCCGGTCA 1167 >seq220038 Length=663 Score = 141 bits (156), Expect = 2e-31 Identities = 131/162 (81%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| ||| |||| || | |||||| || || ||| ||||||||||||||||| Sbjct 179 GGCGTTGCTCGGTCAGACTTCCGTCCATTGCCGAAGATTCCCTACTGCTGCCTCCCGTAG 120 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCA-ATGTGGCCGTTCA-ACCTCTCAGTCCGGCTACCG 118 ||||||||||||||||||||||||| |||||||| ||| |||||||| |||||| Sbjct 119 GAGTCTGGGCCGTGTCTCAGTCCCAGGTGTGGCCGATCACCCCTCTCAGGTCGGCTATGT 60 Query 119 ATCGTCGGCTTGGTG-GGCTATTATCTCACCAACTACCTAAT 159 ||||||| ||||||| | || ||| ||||||||||| ||||| Sbjct 59 ATCGTCGCCTTGGTGAGCCTTTTACCTCACCAACTAGCTAAT 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 995728032000