Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq192693 306 6e-81 seq220038 279 8e-73 seq245116 241 2e-61 seq179099 235 9e-60 >seq192693 Length=850 Score = 306 bits (338), Expect = 6e-81 Identities = 244/291 (84%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| | |||||||||||||| | |||| || |||||||||||||||||| Sbjct 741 CCCACGCTTTCGCACATCAGCGTCAGTTACAGACCAGAAAGTCGCCTTCGCCACTGGTGT 682 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| ||| ||| ||||||||||||||||||| |||||||| || ||||| | |||| Sbjct 681 TCCTCCATATCTCTGCGCATTTCACCGCTACACATGGAATTCCACTTTCCTCTTCTGCAC 622 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGT-TTTCACATCTGAC 179 || ||| | |||||| ||||||| |||| ||||| ||| ||||||||| || Sbjct 621 TCTAGATATCCAGTTTGGAATGCAGCACCCAGGTTAAGCCCG-AGTATTTCACATCCCAC 563 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || | || ||||| | |||||||| |||| |||||||||| |||||||||||||||| Sbjct 562 TTAAATATCCACCTACGCTCCCTTTACGCCCAGTAAATCCGGACAACGCTTGCCACCTAC 503 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 502 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTCCTCCTCAGGTA 452 >seq220038 Length=663 Score = 279 bits (308), Expect = 8e-73 Identities = 230/275 (84%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTT-CGCCACTGGTG 59 |||||||||||| |||||||||||||| || | |||| | |||| || ||||||||||| Sbjct 554 CCCACGCTTTCGAGCCTCAGCGTCAGTGACAGACCAGAGAGCCGCTTTTCGCCACTGGTG 495 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 ||||||| ||||||||||||||||||||||||||| |||||||| | || || | ||| Sbjct 494 TTCCTCCATATATCTACGCATTTCACCGCTACACATGGAATTCCACTCTCCCCTTCTGCA 435 Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGT-TTTCACATCTGA 178 |||||| | |||||||| | ||| |||||| ||||||| |||| ||| || | || Sbjct 434 CTCAAGTCAGACAGTTTCCAGAGCACACTATGG-TTGAGCC-ATAGCCTTTTACTCCAGA 377 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 ||| ||| |||||| | | |||||||| ||||||||||||||| |||||| | ||||| Sbjct 376 CTTTCCTGACCGCCTGCGCTCCCTTTACGCCCAATAAATCCGGACAACGCTCGGGACCTA 317 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGT 273 ||||||||||||||||||||||||||||||||||| Sbjct 316 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGT 282 >seq245116 Length=542 Score = 241 bits (266), Expect = 2e-61 Identities = 221/278 (79%), Gaps = 1/278 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||| ||||||||| |||||| ||||||||||||| ||| | Sbjct 434 CCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGGGGCCGCCTTCGCCACCGGTAT 375 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| || |||||||||||||||||||||| ||||||| ||||| | || Sbjct 374 TCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCCTCTACGAGAC 315 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| |||| ||| |||||| ||||||||| | ||||||||| | || Sbjct 314 TCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTTGAGCCGTGGGCTTTCACATCAG-CT 256 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | |||||||| ||| |||||| |||||||| |||||||||||||||||||||||| Sbjct 255 TAAAAAACCGCCTACGCGCGCTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTACG 196 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 |||||||||||||||||||||||||||||||||||||| Sbjct 195 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 158 >seq179099 Length=1167 Score = 235 bits (260), Expect = 9e-60 Identities = 223/283 (79%), Gaps = 4/283 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| |||||||||||| | | |||| | ||||||||||||||||||| Sbjct 716 CCCACGCTTTCGCTCCTCAGCGTCAGGAAAGGCCCAGAGAACCGCCTTCGCCACTGGTGT 775 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| |||||| |||||| ||||||| ||| |||||||| | || || | | Sbjct 776 TCCTCCTGATATCTGCGCATTCCACCGCTCCACCAGGAATTCCATTCTCCCCTACCTTCC 835 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| || | || || || ||| ||| ||||| ||||| || || ||| || ||| Sbjct 836 TCAAGTCAACCCGTATCGAAAGCACGCTCAGGGTTAAGCCCCAAGATTACACTTCCGAC- 894 Query 181 TGCCTTC--CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 || || || ||||| ||||||||| ||||||||||||||| |||||| || |||| Sbjct 895 -GCGATCAACCACCTACGAGCCCTTTACGCCCAATAAATCCGGACAACGCTCGCACCCTA 953 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATT 281 |||||||||||||||||||||||||||||||||| |||| || Sbjct 954 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTCTT 996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 826651238875