Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq192693 239 1e-60 seq179099 174 4e-41 seq220038 172 1e-40 seq245116 98.7 2e-18 seq220188 87.8 4e-15 >seq192693 Length=850 Score = 239 bits (264), Expect = 1e-60 Identities = 309/421 (73%), Gaps = 22/421 (5%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||| |||||| || || ||| |||||||| | || |||||||| || | ||||| Sbjct 424 CTTTACAATCCGAAGACCGTCATCACTCACGCGGCGTTGCCGCATCAGGGTTTCCCCCAT 365 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| || Sbjct 364 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATG 305 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||| | ||| |||||||| | |||| | |||||||||| |||| ||| ||||| | || Sbjct 304 TGGCCGATCACCCTCTCAGGTCGGCTACGCATCGTCGCCTTGGTGAGCCGTTACCTCACC 245 Query 184 AACTAGCTAATCCCA-TCTGGGTTCATCCGATAGTG--AGAGGCCCGAAGGTCC--CCCT 238 ||||||||||| | | | |||| |||| |||| | | || | | | | Sbjct 244 AACTAGCTAATGCGACNCGGGGTCCATCTCATAGCGGATTACTCCTTTAATTGCTATGCC 185 Query 239 CTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCAT 298 | || | | | ||||||||||||| | | |||| || ||| |||||| || Sbjct 184 ATGCGGCACTACAATCTTATGCGGTATTAATCTTCCTTTCGGAAGGCTATTCCCCTCTAT 125 Query 299 CAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACT-CGTCA---GCGAAGCAGCAA 353 ||||| ||| |||| ||||||||||||||||| || ||| ||||| | Sbjct 124 GAGGCAGGTTACCCACGTGTTACTCACCCGTCCGCCGCTAATTCACTCCCGAAGGA---- 69 Query 354 GCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGA 413 ||||| | || ||||||||||||||||| || ||||||||||||| |||| Sbjct 68 ---GCTTC-----ATCGCTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTCGTCCTGA 17 Query 414 G 414 | Sbjct 16 G 16 >seq179099 Length=1167 Score = 174 bits (192), Expect = 4e-41 Identities = 116/129 (90%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||||||||||||| || || |||||||| | |||||||||||||| |||||||| Sbjct 1039 TTTACAACCCGAAGGCCGTCATCCCGCACGCGGCGTTGCTGCATCAGGCTTCCGCCCATT 1098 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||| Sbjct 1099 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAATGT 1158 Query 125 GGCTGGTCA 133 ||| ||||| Sbjct 1159 GGCCGGTCA 1167 >seq220038 Length=663 Score = 172 bits (190), Expect = 1e-40 Identities = 157/194 (81%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||| | ||||| ||||||||| |||||||| | ||| |||| ||| || |||| Sbjct 211 CTTTACGATCCGAAAACCTTCTTCACTCACGCGGCGTTGCTCGGTCAGACTTCCGTCCAT 152 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA-GT 122 || || |||||| ||||||||||||||||||||||||| |||||||||||| ||| || Sbjct 151 TGCCGAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGGT 92 Query 123 GTGGCTGGTCA-TCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCC-ATTACCCC 180 ||||| | ||| |||||||| | |||| | |||||||||| |||| ||| ||||| | Sbjct 91 GTGGCCGATCACCCCTCTCAGGTCGGCTATGTATCGTCGCCTTGGTGAGCCTTTTACCTC 32 Query 181 GCCAACTAGCTAAT 194 ||||||||||||| Sbjct 31 ACCAACTAGCTAAT 18 >seq245116 Length=542 Score = 98.7 bits (108), Expect = 2e-18 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||| | |||||| ||||| ||| |||||||| | ||| | |||||||| |||||||| Sbjct 92 TTTACGATCCGAAGACCTTCATCACTCACGCGGCGTTGCTCCGTCAGGCTTTCGCCCATT 33 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGG 96 | | || |||||| |||||||||||||||||| Sbjct 32 GCGGAAGATTCCCTACTGCTGCCTCCCGTAGG 1 >seq220188 Length=662 Score = 87.8 bits (96), Expect = 4e-15 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 362 CTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 120 CTGTTACCGTTCGACTTGCATGTGTAAGGCATGCCGCCAGCGTTCAATCTGAG 68 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1219128552000