Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq192693 506 6e-141 seq179099 291 2e-76 seq220038 271 2e-70 seq245116 232 2e-58 >seq192693 Length=850 Score = 506 bits (560), Expect = 6e-141 Identities = 402/480 (84%), Gaps = 4/480 (1%) Strand=Plus/Plus Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCG 82 ||||||||||||||||||||| ||||||||||||||| || | | ||| | | ||| Sbjct 86 AGCGGCGGACGGGTGAGTAACACGTGGGTAACCTGCCTCATAGAGGGGAATAGCCTTCCG 145 Query 83 AAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGC--TC 140 ||||| | |||||| |||| || | | ||||||| | | || |||| | Sbjct 146 AAAGGAAGATTAATACCGCATAAGATTGTAGTGCCGCATGGCATAGCAATTAAAGGAGTA 205 Query 141 CGGCGGTACAGGATAGACCC-GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAA 199 || || ||| ||||| | ||| |||||||||||||| ||||||||||| ||||| Sbjct 206 ATCCGCTATGAGATGGACCCCGNGTCGCATTAGCTAGTTGGTGAGGTAACGGCTCACCAA 265 Query 200 GGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTC 259 ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 266 GGCGACGATGCGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGGACTGAGACACGGCC 325 Query 260 CAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAG 319 || ||||||||||||||||||||||||||||||||||||||||| ||| |||||||| | Sbjct 326 CAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCCTGATGCGG 385 Query 320 CAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAA 379 |||||||||||||| ||||| || |||||| | ||||||||||||| ||| ||| ||||| Sbjct 386 CAACGCCGCGTGAGTGATGACGGTCTTCGGATTGTAAAGCTCTGTCTTCAGGGACGATAA 445 Query 380 TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTA 439 ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 446 TGACGGTACCTGAGGAGGAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTA 505 Query 440 GGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 || ||| |||||| |||||| ||||| |||||||||||| |||||||||| | |||||| Sbjct 506 GGTGGCAAGCGTTGTCCGGATTTACT-GGGCGTAAAGGGAGCGTAGGTGGATATTTAAGT 564 >seq179099 Length=1167 Score = 291 bits (322), Expect = 2e-76 Identities = 228/268 (85%), Gaps = 6/268 (2%) Strand=Plus/Minus Query 229 TGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGA 288 ||| |||||||||||| ||||||| |||| ||| |||||||||||||||||||||||||| Sbjct 1167 TGACCGGCCACATTGGGACTGAGATACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGA 1108 Query 289 ATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCG 348 |||||||||||||||| ||||||||||||||||||||||||| | ||||| |||||||| Sbjct 1107 ATATTGCACAATGGGCGGAAGCCTGATGCAGCAACGCCGCGTGCGGGATGACGGCCTTCG 1048 Query 349 GGTCGTAAA--GCTCTGTCCT-CAAGGAA--GATAATGACGGTACTTGAGGAGGAAGCCC 403 ||| ||||| ||| | ||| | ||| | | |||||||| | | | ||||| | Sbjct 1047 GGTTGTAAACCGCTTTCGCCTGTGACGAAGCGTGAGTGACGGTAATGGGTAAAGAAGCAC 988 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||||||||||||||||||||||||||||||||| || |||||| |||||| ||| Sbjct 987 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGATTTA 928 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 | |||||||||||| ||||||||||| Sbjct 927 -TTGGGCGTAAAGGGCTCGTAGGTGGTT 901 >seq220038 Length=663 Score = 271 bits (300), Expect = 2e-70 Identities = 280/368 (76%), Gaps = 30/368 (8%) Strand=Plus/Plus Query 152 GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAAC-GGCTTACCAAGGCGACGATCA 210 ||| |||| |||| |||||||||||||| |||||| |||| |||||||||||||| Sbjct 2 GATGGACCTGCGTTGTATTAGCTAGTTGGTGAGGTAAAAGGCTCACCAAGGCGACGATAC 61 Query 211 GTAGCCGACCTGAGAGGG-TGATCGGCCACAT-TGGAACTGAGACACGGTCCAAACTCCT 268 ||||||||||||||||| |||||||||||| ||| |||||||||||| ||| |||||| Sbjct 62 ATAGCCGACCTGAGAGGGGTGATCGGCCACACCTGGGACTGAGACACGGCCCAGACTCCT 121 Query 269 ACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGC 328 ||||||||||||||| |||||| || |||||| | ||| |||| ||||||||||| Sbjct 122 ACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGGAAGTCTGACCGAGCAACGCCGC 181 Query 329 GTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA------------ 376 ||||| || ||||| ||||| |||||||||||||| | | ||||| Sbjct 182 GTGAGTGAAGAAGGTTTTCGGATCGTAAAGCTCTGTTGTTAGAGAAGAACGTTGGTAGGA 241 Query 377 --------------TAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGC 422 | |||||||| | | || ||| ||||||||||||||||||| Sbjct 242 GTGGAAAATCTACCAAGTGACGGTAACTAACCAGAAAGGGACGGCTAACTACGTGCCAGC 301 Query 423 AGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCG 482 ||||||||||||||||||| | |||||| |||||| ||| | |||||||||||| ||| Sbjct 302 AGCCGCGGTAATACGTAGGTCCCGAGCGTTGTCCGGATTTA-TTGGGCGTAAAGGGAGCG 360 Query 483 TAGGTGGT 490 ||| ||| Sbjct 361 CAGGCGGT 368 >seq245116 Length=542 Score = 232 bits (256), Expect = 2e-58 Identities = 204/258 (79%), Gaps = 26/258 (10%) Strand=Plus/Plus Query 266 CCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGC 325 |||||||||||||||||| |||||| || | |||||||| ||||||||| | |||||||| Sbjct 1 CCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGAAAGCCTGACGGAGCAACGC 60 Query 326 CGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--------- 376 |||||||| |||||||| |||||| ||||||| |||||| | | |||||| Sbjct 61 CGCGTGAGTGATGAAGGTCTTCGGATCGTAAAACTCTGTTATTAGGGAAGAACATATGTG 120 Query 377 ----TAA------------TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCA 420 ||| ||||||||| | | || ||||| ||||||||||||||||| Sbjct 121 TAAGTAACTGTGCACATCTTGACGGTACCTAATCAGAAAGCCACGGCTAACTACGTGCCA 180 Query 421 GCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTG 480 ||||||||||||||||||||| ||| ||||||||||||||||| | |||||||||| | | Sbjct 181 GCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTA-TTGGGCGTAAAGCGCG 239 Query 481 CGTAGGTGGTTTCTTAAG 498 |||||| ||||| ||||| Sbjct 240 CGTAGGCGGTTTTTTAAG 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1493592048000