Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq192693 414 2e-113 seq220038 370 3e-100 seq245116 347 3e-93 seq179099 347 3e-93 >seq192693 Length=850 Score = 414 bits (458), Expect = 2e-113 Identities = 331/399 (83%), Gaps = 0/399 (0%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 452 TACCTGAGGAGGAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGC 511 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 |||||| |||||| ||||||||||||||||| |||||||||| | |||||| || || Sbjct 512 AAGCGTTGTCCGGATTTACTGGGCGTAAAGGGAGCGTAGGTGGATATTTAAGTGGGATGT 571 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 |||| || |||| |||| || |||| || |||||| | ||||||||||| || Sbjct 572 GAAATACTCGGGCTTAACCTGGGTGCTGCATTCCAAACTGGATATCTAGAGTGCAGAAGA 631 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || |||||||||||| |||||||||||||||||| ||| || |||||||||||||||| Sbjct 632 GGAAAGTGGAATTCCATGTGTAGCGGTGAAATGCGCAGAGATATGGAGGAACACCAGTGG 691 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 |||||||| ||| |||| ||||||||||| |||| | |||||||||||||| ||||||| Sbjct 692 CGAAGGCGACTTTCTGGTCTGTAACTGACGCTGATGTGCGAAAGCGTGGGGATCAAACAG 751 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAA 360 ||||||||||||||||||||||||||||||||||||| | ||| |||| ||| | | Sbjct 752 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTAGGGGGTTTCC 811 Query 361 GTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACC 399 | | |||| ||||| |||||| |||| | ||| || Sbjct 812 GCCCCTTAGTGCTGCAGCTAACGCATTAAGCACTCCGCC 850 >seq220038 Length=663 Score = 370 bits (410), Expect = 3e-100 Identities = 313/382 (82%), Gaps = 2/382 (1%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 |||||||||||||||||||||||||||||||||||||| | |||||| |||||| ||| Sbjct 283 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTCCCGAGCGTTGTCCGGATTTA 342 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 ||||||||||||| ||| ||| ||| ||||| | || ||||||||||||||||| Sbjct 343 TTGGGCGTAAAGGGAGCGCAGGCGGTCAGGAAAGTCTGGAGTAAAAGGCTATGGCTCAAC 402 Query 139 CCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAG 198 | | |||| | ||||||| | || |||||||| ||||| ||||||||||| | Sbjct 403 CATAGTG-TGCTCTGGAAACTGTCTGACTTGAGTGCAGAAGGGGAGAGTGGAATTCCATG 461 Query 199 TGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAG-GCGGCTTGCTGG 257 |||||||||||||||||||||||| |||||||||||||||||||| |||||| |||| Sbjct 462 TGTAGCGGTGAAATGCGTAGATATATGGAGGAACACCAGTGGCGAAAAGCGGCTCTCTGG 521 Query 258 ACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA 317 |||| |||||| |||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 522 TCTGTCACTGACGCTGAGGCTCGAAAGCGTGGGTAGCGAACAGGATTAGATACCCTGGTA 581 Query 318 GTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGCCGCAG 377 |||||||||||||||||||| | |||||||| || | | | | |||||| || Sbjct 582 GTCCACGCCGTAAACGATGAGTGCTAGGTGTTAGGCCCTTTCCGGGGCTTAGTGCCGGAG 641 Query 378 CAAACGCAATAAGTATTCCACC 399 | ||||||||||| | ||| || Sbjct 642 CTAACGCAATAAGCACTCCGCC 663 >seq245116 Length=542 Score = 347 bits (384), Expect = 3e-93 Identities = 274/327 (84%), Gaps = 1/327 (0%) Strand=Plus/Plus Query 10 AGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 69 || ||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 155 AGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTAT 214 Query 70 CCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTA 129 ||||||||| ||||||||||| | ||||||| ||||| ||||| | || ||||||| | | Sbjct 215 CCGGAATTATTGGGCGTAAAGCGCGCGTAGGCGGTTTTTTAAG-CTGATGTGAAAGCCCA 273 Query 130 TGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGG 189 ||||||||| || ||||| | ||| |||| ||| |||| | || || || | Sbjct 274 CGGCTCAACCTGGGAACTGCATCTGATACTGGCAAGCTTGAGTCTCGTAGAGGGGGGTAG 333 Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249 |||||| |||||||||||||||||||||| || ||||||| ||| ||||||||||||| Sbjct 334 AATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTGGCGAAGGCGG 393 Query 250 CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309 | |||||| |||||| || ||| ||||||||||||||||||||||||||||||| Sbjct 394 CCCCCTGGACGAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATA 453 Query 310 CCCTGGTAGTCCACGCCGTAAACGATG 336 ||||||||||||||||||||||||||| Sbjct 454 CCCTGGTAGTCCACGCCGTAAACGATG 480 >seq179099 Length=1167 Score = 347 bits (384), Expect = 3e-93 Identities = 321/401 (80%), Gaps = 7/401 (2%) Strand=Plus/Minus Query 12 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 71 ||||| |||||||||||||||||||||||||||||||||||||||| || |||||| ||| Sbjct 994 GAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCC 935 Query 72 GGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATG 131 ||| ||| ||||||||||||| ||||||||||| | ||| || ||| || | | Sbjct 934 GGATTTATTGGGCGTAAAGGGCTCGTAGGTGGTTGATCGCGTCGGAAGTGTAATCTTGGG 875 Query 132 GCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGG-AGGGGCAAGTGGA 190 ||| ||||| | | |||||| || || | | || ||| | ||| ||||| | |||| Sbjct 874 GCTTAACCCTGAGCGTGCTTTCGATACGGGTTGACTTGAG-GAAGGTAGGGGAGAATGGA 816 Query 191 ATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGC 250 |||||| ||| ||||||| |||||| |||||| |||||||||||||||||||||||||| Sbjct 815 ATTCCTGGTGGAGCGGTGGAATGCGCAGATATCAGGAGGAACACCAGTGGCGAAGGCGGT 756 Query 251 TTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATAC 310 | |||| | | ||||| |||||| |||||||||||||||| |||||| |||||||| Sbjct 755 TCTCTGGGCCTTTCCTGACGCTGAGGAGCGAAAGCGTGGGGAGCGAACAGGCTTAGATAC 696 Query 311 CCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT---AAGTGCTCC 367 ||||||||||||||| ||||||| || |||||||||| |||| ||| | | | ||| Sbjct 695 CCTGGTAGTCCACGCTGTAAACGGTGGGTACTAGGTGT-GGGGTCCATTCCACGGGTTCC 637 Query 368 GGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | |||| ||| ||||| |||||| || ||||||||||| Sbjct 636 -GCGCCGTAGCTAACGCTTTAAGTACCCCGCCTGGGGAGTA 597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1199979936000