Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Felis_20catus_20[refseq_20GCF_5F000181335.2_202014-11-07] 267,625 sequences; 2,641,342,258 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq192693 156 9e-36 seq220038 140 7e-31 seq179099 114 3e-23 seq245116 96.9 7e-18 >seq192693 Length=850 Score = 156 bits (172), Expect = 9e-36 Identities = 160/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 73 TCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGT 132 ||||| | | ||| ||||||||||| ||| || ||||| |||||| | | || | Sbjct 439 TCCCTGAAGACAGAGCTTTACAATCCGAAGA-CCGTCATCACTCACGCGGCGTTGCCGCA 381 Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| | || |||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 380 TCAGGGTTTCCCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 321 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGT 252 ||||||||| ||||||||| || | |||||||| | ||| |||||| | || ||| Sbjct 320 TGTCTCAGTCCCAATGTGGCCGATCACCCTCTCAGGTCGGCTACGCATCGTCGCCTTGGT 261 Query 253 GGGCCGTTACCCCGCCTACTACCTAATG 280 | ||||||||| | || |||| |||||| Sbjct 260 GAGCCGTTACCTCACCAACTAGCTAATG 233 >seq220038 Length=663 Score = 140 bits (154), Expect = 7e-31 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 69 TTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGC 128 || ||| || | || ||| ||||| ||||| | ||||||| || |||||| | | || Sbjct 230 TTCTTCTCTAACAACAGAGCTTTACGATCCGAA-AACCTTCTTCACTCACGCGGCGTTGC 172 Query 129 TGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGG 188 | | ||||||| ||||||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 171 TCGGTCAGACTTCCGTCCATTGCCGAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGG 112 Query 189 ACCGTGTCTCAGTTCCA-ATGTGGGGGA-CCTTCCTCTCAGAACCCCTATCCATCGTAGG 246 |||||||||||| ||| ||||| || | |||||||| | |||| ||||| | Sbjct 111 GCCGTGTCTCAGTCCCAGGTGTGGCCGATCACCCCTCTCAGGTCGGCTATGTATCGTCGC 52 Query 247 CTAGGTGGGCC-GTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 || |||| ||| ||||| | || |||| ||||| |||||| ||||| Sbjct 51 CTTGGTGAGCCTTTTACCTCACCAACTAGCTAATACAACGCAGGTCCATC 2 >seq179099 Length=1167 Score = 114 bits (126), Expect = 3e-23 Identities = 104/130 (80%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 |||| |||||||| ||| || || |||||| ||||| | | |||| |||| || Sbjct 1032 AAAGCGGTTTACAACCCGAAGG-CCGTCATCCCGCACGCGGCGTTGCTGCATCAGGCTTC 1090 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||| ||||||||| |||||||||||||||||||||| ||| |||| ||||||| Sbjct 1091 CGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGT 1150 Query 202 TCCAATGTGG 211 ||||||||| Sbjct 1151 CCCAATGTGG 1160 >seq245116 Length=542 Score = 96.9 bits (106), Expect = 7e-18 Identities = 136/187 (73%), Gaps = 7/187 (4%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCC-CACA-- 57 ||||||||||||| ||||||||| |||| | || |||||| |||| | |||| Sbjct 186 GGCTGCTGGCACGTAGTTAGCCGTGGCTTTCTGATTAGGTACCGTCAAGATGTGCACAGT 127 Query 58 --CGTGGA-AGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCT 114 | | | | | || |||||| |||| ||| ||||| ||||| ||| |||||||| Sbjct 126 TACTTACACATATGTTCTTCCCTAATAACAGAGTTTTACGATCCGAAGA-CCTTCATCAC 68 Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174 |||||| | | ||| |||| || ||| |||||| || ||||| ||||||||||| Sbjct 67 TCACGCGGCGTTGCTCCGTCAGGCTTTCGCCCATTGCGGAAGATTCCCTACTGCTGCCTC 8 Query 175 CCGTAGG 181 ||||||| Sbjct 7 CCGTAGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1065939624000