Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq454730 178 2e-42 seq1512 140 5e-31 seq936 131 3e-28 seq12173 120 5e-25 seq2902 107 3e-21 seq65234 91.5 2e-16 seq69948 87.8 3e-15 seq119018 84.2 3e-14 seq11010 78.8 1e-12 seq131044 75.2 2e-11 >seq454730 Length=533 Score = 178 bits (196), Expect = 2e-42 Identities = 166/205 (81%), Gaps = 7/205 (3%) Strand=Plus/Plus Query 22 TCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTG 81 ||||||||||||| ||||||||||||||||||||||| ||||||| | | | ||||| Sbjct 3 TCAACGCGAGCTT-ATGACTCGCGCTTACTAGGAATT-CCTCGTTTATGGGGGATAATTG 60 Query 82 CAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGG 140 ||| | ||||||| ||||| | | |||||| | || ||||| ||| | ||||| || Sbjct 61 CAAACCCCAATCCCCAGCACGAAGGAGTTTCAACGGGTTGCCCGGGCCTCTAGGCCAGGG 120 Query 141 TGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCAT 200 || || | ||| | | ||||||||||||||||||||||||| |||||||||||||| Sbjct 121 AGA---ACATGCTGATTCCTTCAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCAT 177 Query 201 CACAGACCTGTTATTGCCTCAAACT 225 |||||||||||||||| ||||| || Sbjct 178 CACAGACCTGTTATTG-CTCAATCT 201 >seq1512 Length=676091 Score = 140 bits (154), Expect = 5e-31 Identities = 167/222 (75%), Gaps = 11/222 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || || | | ||||| ||||| ||| |||||| |||||| | Sbjct 420907 GTACAAAGGGCAGGGACTTAATCGAGGGAAGCTT-ATGACCCGCCCTTACTGGGAATT-C 420964 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116 |||||| | | || || |||||| | ||||||||||| |||| |||| | Sbjct 420965 CTCGTTCATGGGGAATAACTGCAATCCCCGATCCCCATCAC----AAATGGGGTTCAGCG 421020 Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 ||||||| ||||| |||| ||| | || || ||| |||||| |||||||| Sbjct 421021 GGTTACCCGCACCTGCCGGCGTAGGGAAGGCACACGCTGAGCCAGTCAGTGCAGCGCGCG 421080 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 || |||| | ||||||||||||||||||||||||||||||| Sbjct 421081 GGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 421122 >seq936 Length=54017 Score = 131 bits (144), Expect = 3e-28 Identities = 158/210 (75%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 25 ACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAA 84 |||| ||||| ||||| || |||||| |||||| ||||||| | | || |||||||| Sbjct 35421 ACGCAAGCTT-ATGACCTGCACTTACTGGGAATT-CCTCGTTCACCAGGAATAATTGCAA 35364 Query 85 TGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGA 143 | ||||||||||||| ||||| | ||||||| |||| |||| ||| | Sbjct 35363 TCCCTGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTA 35304 Query 144 TAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCAC 203 || || ||| |||||||||||||||||| |||| | ||||||||||||||||| Sbjct 35303 GGTACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCAC 35244 Query 204 AGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||||||||||||| ||||| || ||||| Sbjct 35243 AGACCTGTTATTG-CTCAATCTCGGGTGGC 35215 >seq12173 Length=148226 Score = 120 bits (132), Expect = 5e-25 Identities = 170/234 (73%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| | ||||| ||| | | |||||| |||||| | Sbjct 36759 GTACAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGGCCTGTACTTACTGGGAATT-C 36702 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 ||| || | | || ||||||||| | |||||||| | || ||||| || || Sbjct 36701 CTCATTCATGGAGAATAATTGCAATCCCCGATCCCCATTATGAATGGGGTTCAACAGGTT 36642 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | |||| ||| ||| | || ||||| |||| ||||| |||||| Sbjct 36641 ACCTGTGCCTGCAGGCGTAGGGTAAGCACATGTTGAGCCAGTCAGGGTAGCATGCGTGCA 36582 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||| ||||||||||| | ||||| ||| ||||| Sbjct 36581 GCCCTGGACATCTAAGGGCATCATAGACCTGTTATCG-CTCAATCTTGAGTGGC 36529 >seq2902 Length=732234 Score = 107 bits (118), Expect = 3e-21 Identities = 131/176 (74%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 43 GCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG 102 || |||||| ||||| ||||||| | | || ||||||||| | |||||||||||| Sbjct 255955 GCACTTACTGGGAATC-CCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACG 256013 Query 103 ATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT 161 | ||||| | ||||||| |||| |||| ||| | || || ||| | Sbjct 256014 AATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGT 256073 Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||||||||| ||| ||| | ||||||||||||||||||||||||||||||| Sbjct 256074 CAGTGTAGCGCGCATGCAACCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 256129 Score = 82.4 bits (90), Expect = 1e-13 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||||||| |||| |||| ||| | || || ||| |||||||||||||| || Sbjct 256294 TTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCATG 256353 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 | ||| | ||||||||||||||||||||||||||||||| Sbjct 256354 CAACCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 256393 >seq65234 Length=200 Score = 91.5 bits (100), Expect = 2e-16 Identities = 60/65 (92%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 69 TCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 11 Query 221 AAACT 225 || || Sbjct 10 AATCT 6 >seq69948 Length=201 Score = 87.8 bits (96), Expect = 3e-15 Identities = 62/70 (89%), Gaps = 1/70 (1%) Strand=Plus/Plus Query 164 GTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 223 ||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 111 GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAAT 169 Query 224 CTTCCGTGGC 233 || ||||| Sbjct 170 CTCGGGTGGC 179 >seq119018 Length=218 Score = 84.2 bits (92), Expect = 3e-14 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||| ||| Sbjct 90 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAA-TTC 33 Query 61 CTCGTTGAAGACCAACAATTGCAAT 85 |||||| | | || ||||||||| Sbjct 32 CTCGTTCATGGGGAATAATTGCAAT 8 >seq11010 Length=77174 Score = 78.8 bits (86), Expect = 1e-12 Identities = 57/65 (88%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||| | |||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 53862 TCAGTGTAGCACATGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 53920 Query 221 AAACT 225 || || Sbjct 53921 AATCT 53925 >seq131044 Length=222 Score = 75.2 bits (82), Expect = 2e-11 Identities = 71/91 (78%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||||||| |||| |||| ||| | || || ||| ||||||||||||||||| Sbjct 219 TTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTG 160 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACC 208 | |||| | |||||||||||||||||||||| Sbjct 159 CAGCCCCGGACATCTAAGGGCATCACAGACC 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 748261505555