Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq464606 145 1e-32 seq55403 145 1e-32 seq22599 114 2e-23 seq124153 75.2 2e-11 seq118743 73.4 7e-11 seq198 73.4 7e-11 >seq464606 Length=586 Score = 145 bits (160), Expect = 1e-32 Identities = 200/275 (73%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTT 98 ||| ||| ||| |||| | | || ||| | | ||| ||||||||||||||||||||| Sbjct 145 TGCTCTTAGCTGAGTGTCCTGCGGGGCCCAAAGCGTTTTCTTTGAAAAAATTAGAGTGTT 204 Query 99 CAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| || | |||| ||| |||||||| ||||||||| || ||| Sbjct 205 CAAAGCAGGCCTGAGCCGCCTGGATACTGCAGCTAGGAATAATGGAATAGGAC-TGTGGT 263 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215 |||||||||||||||| | | || | | ||||| || ||||| | ||||| | | Sbjct 264 TCTATTTTGTTGGTTTTTGGAACTGAGGCCATGATGAAGAGGGACGGCTGGGGGCATTCG 323 Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275 |||| || ||||||||||||| |||| ||||| || | || ||||| | Sbjct 324 TATTGTGCTGCTAGAGGTGAAATTCCTGGACCGGCACAAGACAGACCAGAGCAAAAGCAT 383 Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 | ||||| || ||||||||||||| |||||||| Sbjct 384 TTGCCAAGAATTTTTTCATTAATCA-AGAACGAAA 417 >seq55403 Length=1807 Score = 145 bits (160), Expect = 1e-32 Identities = 200/275 (73%), Gaps = 6/275 (2%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTT 98 ||| ||| ||| |||| | | || ||| | | ||| ||||||||||||||||||||| Sbjct 1310 TGCTCTTAGCTGAGTGTCCTGCGGGGCCCAAAGCGTTTTCTTTGAAAAAATTAGAGTGTT 1251 Query 99 CAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||||| || | |||| ||| | |||||| ||||||||| |||||| Sbjct 1250 CAAAGCAGGCCCGAGCCGCCTGGATACTGCAGCTAGAAATAATGGAATAGGAC-TGCGGT 1192 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215 |||||||||||||||| | | || | | ||||| || ||||| | ||||| | | Sbjct 1191 TCTATTTTGTTGGTTTTTGGAACTGAGGCCATGATGAAGAGGGACGGCTGGGGGCATTCG 1132 Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275 |||| || ||||||||||||| |||| |||||| || | || ||||| | Sbjct 1131 TATTGTGGTGCTAGAGGTGAAATTCCTGGACCGGCAGAAGACAGACCAGAGCAAAAGCAT 1072 Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 | ||||| || ||||||||||||| |||||||| Sbjct 1071 TTGCCAAGAATTTTTTCATTAATCA-AGAACGAAA 1038 >seq22599 Length=8172 Score = 114 bits (126), Expect = 2e-23 Identities = 136/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| ||||||||| ||||||||||||||||||||| | || | | ||||| Sbjct 28 GGAATAATGGAATAGGACC-GCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 86 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| | ||| | |||||| | ||||| | |||||||||||||||||| Sbjct 87 TAAGATGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGC 146 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| || | |||||||| || ||||| |||||||||||||||| |||||||| Sbjct 147 GCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAA 205 Query 311 GT 312 || Sbjct 206 GT 207 >seq124153 Length=220 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/73 (84%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 38 CATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTG 96 || || ||| ||| |||| ||| || ||| | | | ||||||||||||||||||||||| Sbjct 127 CAGGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTG 186 Query 97 TTCAAAGCAGGCC 109 ||||||||||||| Sbjct 187 TTCAAAGCAGGCC 199 >seq118743 Length=218 Score = 73.4 bits (80), Expect = 7e-11 Identities = 65/81 (80%), Gaps = 3/81 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC---TTTGCTCGAATACATTAGCAT 130 |||||||||||||||||||||||||||||||||||| || | |||| ||| Sbjct 13 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 72 Query 131 GGAATAATAGAATAGGACGTG 151 |||||||| ||||||||| || Sbjct 73 GGAATAATGGAATAGGACCTG 93 >seq198 Length=88056 Score = 73.4 bits (80), Expect = 7e-11 Identities = 85/113 (75%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTT 98 ||| ||| ||| |||| | | || ||| | | ||| ||||||||||||||||||||| Sbjct 76505 TGCTCTTAGCTGAGTGTCCTGCGGGGCCCAAAGCGTTTTCTTTGAAAAAATTAGAGTGTT 76564 Query 99 CAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGAC 148 |||||||||||| || | |||| ||| |||||||| ||||||||| Sbjct 76565 CAAAGCAGGCCTGAGCCGCCTGGATACTGCAGCTAGGAATAATGGAATAGGAC 76617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 910503404096