Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq48630 206 1e-50 seq11191 150 7e-34 seq454007 132 2e-28 seq3634 132 2e-28 seq1224 131 7e-28 seq456551 123 1e-25 seq15936 120 1e-24 seq198 118 4e-24 seq1304 111 7e-22 seq14402 98.7 4e-18 seq505848 96.9 1e-17 seq9717 87.8 7e-15 seq14629 82.4 3e-13 >seq48630 Length=936 Score = 206 bits (228), Expect = 1e-50 Identities = 215/278 (77%), Gaps = 8/278 (3%) Strand=Plus/Plus Query 410 CGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCG 469 ||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 361 CGTCTTGAAACACGAGCCAAGGAGTCTAACACTCGTGCGAGTGTTTGGGTGTCAAACCCG 420 Query 470 TGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGAT--- 526 | |||| |||||||||||| | | ||| | |||| | || | | | | || Sbjct 421 TACGCGCAATGAAAGTGAAAGCA--TGGCATCCCGGGTTCGTCC-CGGGCCTCACATGCG 477 Query 527 -CCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTG 585 || | || ||| | |||||| | | | ||||| | |||| ||||||||||||||||| Sbjct 478 GCCGGTTGCCTTTTGGTGGATT-GCGCAGGAGCACGGTTGTTAGGACCCGAAAGATGGTG 536 Query 586 AACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645 ||||||||||| |||| ||||| ||| |||| ||| |||||| ||||||| | ||| Sbjct 537 AACTATGCCTGGGTAGGATGAAGTCAGGCGAAAGCCTGATGGAGGTCCGCAGCGATACTG 596 Query 646 GCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||| |||||||| ||||||||||||||| Sbjct 597 ACGTGCAAATCGTTCGTCAAACCTGGGTATAGGGGCGA 634 Score = 98.7 bits (108), Expect = 4e-18 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 |||| ||| |||||||| ||| ||||||||||||| | ||||| |||| ||| || Sbjct 1 TTCTCATAAGGCTAAATACTGGTGTGAGACCGATAGCGAAGAAGTACCGTGAGGGAAGGA 60 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||||||| |||||| ||| || ||| ||||| || ||||| || |||||||||| Sbjct 61 TGAAAAGGACTTTGAAAAAAGTGTT-AAAAGTACCTGAAACTGCTGAAAGGGAA 113 >seq11191 Length=404916 Score = 150 bits (166), Expect = 7e-34 Identities = 116/138 (84%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 ||| || | |||| | |||| |||||||||||||||||||||||||||| |||| | Sbjct 95116 TTTCAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCG 95057 Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 ||||||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| Sbjct 95056 AAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCG 94997 Query 666 ATTTGGGTATAGGGGCGA 683 | ||||||||||||||| Sbjct 94996 ACCTGGGTATAGGGGCGA 94979 >seq454007 Length=529 Score = 132 bits (146), Expect = 2e-28 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || |||||| |||| |||| |||||| | | ||||| ||||||| Sbjct 389 GAGTCGGGTTGCTTGAGAGTGCAGCCCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 448 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||| | ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 449 ATTACCGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 508 Query 160 AGAGAGTTAAAAAGCACGTGA 180 |||||||| || || |||||| Sbjct 509 AGAGAGTTCAAGAGTACGTGA 529 >seq3634 Length=406406 Score = 132 bits (146), Expect = 2e-28 Identities = 94/108 (87%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 ||||||||||||||||||||| |||| |||||||||||||||||||||||||| || Sbjct 180528 AAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGT 180587 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 180588 AGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 180635 >seq1224 Length=872806 Score = 131 bits (144), Expect = 7e-28 Identities = 101/120 (84%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||| |||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 425961 TGTTAGGACTAGAAAGATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAGCAAACTCTG 425902 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| |||||||||| | ||| | ||||||||||||||| Sbjct 425901 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCAGTTGTCCGACCTGGGTATAGGGGCGA 425842 >seq456551 Length=541 Score = 123 bits (136), Expect = 1e-25 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| ||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 531 TGTTAGGACCCAAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 472 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||||||| | ||| || ||| |||||||||| ||||| | || |||||||||| Sbjct 471 GTGGAGGTCTGTAGCAGTCCTGATGTGCAAATCGGTCGTCCGACCTGAGTATAGGGGC 414 >seq15936 Length=145599 Score = 120 bits (132), Expect = 1e-24 Identities = 100/121 (83%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| ||||||||||||||||||||| || ||| ||||||||||||||||| Sbjct 58175 TGTTAGGACCCAAAAGATGGTGAACTATGCCTGGATGGGGCGAAGCCAGAGGAAACTCCA 58234 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA-GGGGCG 682 ||||||| | |||||| ||| |||||||||| || || | |||||||| |||||| Sbjct 58235 GTGGAGGTCCATAGCGGTCCTGATGTGCAAATCGGTCATCTGACCTGGGTATATGGGGCG 58294 Query 683 A 683 | Sbjct 58295 A 58295 >seq198 Length=88056 Score = 118 bits (130), Expect = 4e-24 Identities = 97/118 (82%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| ||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 81221 TGTTAGGACCCAAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 81280 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||||||| | ||| || || |||||||||| ||||| | || |||||||||| Sbjct 81281 GTGGAGGTCTGTAGCAGTCCTAATGTGCAAATCGGTCGTCCGACCTGAGTATAGGGGC 81338 >seq1304 Length=380674 Score = 111 bits (122), Expect = 7e-22 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 351195 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 351254 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 351255 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 351314 Query 160 AGAGAGTTAAAAAG 173 |||||||| || || Sbjct 351315 AGAGAGTTCAAGAG 351328 >seq14402 Length=37172 Score = 98.7 bits (108), Expect = 4e-18 Identities = 93/118 (79%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATG---CCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 || ||||||||||||||||||||||| |||| |||| |||||||||||||||||| Sbjct 28866 TTAGGACCCGAAAGATGGTGAACTATTATTCCTGGGCAGGGCGAAGCCAGAGGAAACTCT 28925 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 | |||||| ||||| || ||| | || ||||| |||||| | ||| ||| |||| Sbjct 28926 GCTGGAGGTCTGCAGCAGTCCTGACATGTAAATCAGTCGTCAGACCTGGCTATGGGGG 28983 >seq505848 Length=1575 Score = 96.9 bits (106), Expect = 1e-17 Identities = 92/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGC--CTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 || ||||||||||||||||||||||| ||| |||| ||||||||||||||||||| Sbjct 361 TTAGGACCCGAAAGATGGTGAACTATTATTCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 420 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 |||||| ||||| || ||| | || ||||| |||||| | ||| ||| |||| Sbjct 421 CTGGAGGTCTGCAGCAGTCCTGACATGTAAATCAGTCGTCAGACCTGGCTATGGGGG 477 >seq9717 Length=474477 Score = 87.8 bits (96), Expect = 7e-15 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647 ||| ||||| |||| |||||||||||||||||||||||||| || ||| || ||| | Sbjct 141926 CTAAGCCTGGGAAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCAGTCCTGAC 141985 Query 648 GTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||| | | ||| | |||||||| |||||| Sbjct 141986 GTGCAAATTGGTTGTCTGACCTGGGTATAAGGGCGA 142021 >seq14629 Length=174798 Score = 82.4 bits (90), Expect = 3e-13 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 |||||||| |||| |||||||||||| | || |||| ||||||||||||||||||||| Sbjct 26713 TTGGGACCTGAAATATGGTGAACTATCCTTGGGCAGGGAGAAGCCAGAGGAAACTCTGGT 26654 Query 626 GGAGG 630 ||||| Sbjct 26653 GGAGG 26649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2068992353350