Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq5239 104 4e-20 seq44739 100 5e-19 seq1716 86.0 1e-14 seq1519 86.0 1e-14 seq9010 75.2 2e-11 seq3761 73.4 6e-11 >seq5239 Length=334154 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 92523 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 92580 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 92581 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 92634 >seq44739 Length=1865 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | |||||| | ||||| | || | || |||| || || | Sbjct 79 GTACGAGAGGAACTGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 136 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 137 GGGGCGAAGCTACCATCTGTGGGATTATGTCTGAACGCCTCTAAGTCAGAATCC 190 >seq1716 Length=196652 Score = 86.0 bits (94), Expect = 1e-14 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || |||||||||||||||| ||||||||||||||||||||||| Sbjct 96197 TGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGGCTGAACGCCTCTAA 96256 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 96257 GTCAGAATCC 96266 >seq1519 Length=317393 Score = 86.0 bits (94), Expect = 1e-14 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||||| | | || || ||||| | || | || |||| || || | Sbjct 267228 GTACAAGAGGAACCGCAGGTTCAAGCAT--TTGGTGTGTGTGCTTGGCTGAAAAGCCAAT 267171 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| || || |||||||||||||||||| Sbjct 267170 GGGGCGAAGCTACCATCTGTGGGATTATGACTAAATGCCTCTAAGTCAGAATCC 267117 >seq9010 Length=287603 Score = 75.2 bits (82), Expect = 2e-11 Identities = 84/110 (76%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 5 GAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCG 64 ||||||||| || | |||||| | ||||| | || | || |||| || || || Sbjct 198862 GAGAGGAACTGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGTCAATGGGT 198919 Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||| |||||||| ||||| ||||| |||||||||||| Sbjct 198920 CAAAGCTACCATCTGTAGGATTATGACTGAATGCCTCCAAGTCAGAATCC 198969 >seq3761 Length=383510 Score = 73.4 bits (80), Expect = 6e-11 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107 |||| || ||||| || ||||||||||||| |||||||| || ||| |||||||||| Sbjct 273451 CTGAGGAGCCAGTGGAGCAAAGCTACCATCTGTGGGATTATGACTAAACACCTCTAAGTC 273392 Query 108 AGAATCCATGCC 119 ||||||| |||| Sbjct 273391 AGAATCC-TGCC 273381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 815127427328