Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq159 291 3e-76 seq61 288 3e-75 seq288 273 7e-71 seq3 269 9e-70 seq407 228 3e-57 seq40 203 1e-49 seq305 176 1e-41 seq313 123 8e-26 seq28 78.8 3e-12 >seq159 Length=3019745 Score = 291 bits (322), Expect = 3e-76 Identities = 182/196 (93%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 |||| ||||||||| || | |||||| ||||||||||||||||||| || |||||||||| Sbjct 2405407 TTGGATGTGGTTTCACTGGCTAGTAGGTAGGGACAGTGGGAATCTCATTCATCCATTCAT 2405348 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 457 ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2405347 GCGAGTCACTAATTAGATGAGGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 2405288 Query 458 GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517 | |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2405287 GTCGTTTACCCGTGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 2405228 Query 518 TCACATTGCGTCAACA 533 |||||| ||||||||| Sbjct 2405227 TCACATCGCGTCAACA 2405212 >seq61 Length=4764024 Score = 288 bits (318), Expect = 3e-75 Identities = 244/300 (81%), Gaps = 9/300 (3%) Strand=Plus/Plus Query 241 CACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 300 ||||||||||||||||||| ||| ||||| | | | || |||||| |||||| || Sbjct 1993163 CACTTATTCTACACCTCTCCTGTCTCTTCACTGTGCCAGGCTGGAGTCAGACTCAACGGG 1993222 Query 301 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 360 |||||||||||| | |||||| ||||| | ||| |||||||||||||||||| ||||| Sbjct 1993223 GTCTTCTTTCCCTGTTGATTCTGCCAAAGTCATTCACTTGGCTGTGGTTTCGCTGGATAG 1993282 Query 361 TAGATA-------GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | | || ||| |||||||||||| ||| | |||||||||||||||||||||||| Sbjct 1993283 TGGGTAGTGGGTCGGGGCAGTGGGAATCTGGTTCACCCATTCATGCGCGTCACTAATTAG 1993342 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 ||| || |||||||||| |||| | |||||||| ||||||| | ||||||||| || Sbjct 1993343 ATGGTGAAGCATTTGGCTGCCTT--TAAAGTCATAGGTACTCCCACTATTTACCCGCCCT 1993400 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | ||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||| Sbjct 1993401 TCTTTGAATTTCCTCACTTTGACATTCAGAGCACTGGGAAGAAATCACATCACTTCAACA 1993460 >seq288 Length=2081148 Score = 273 bits (302), Expect = 7e-71 Identities = 243/302 (80%), Gaps = 8/302 (3%) Strand=Plus/Plus Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAG----AGTCAAGCT 293 |||| |||||||||||||| ||| ||| ||||| | | |||||| ||||||||| Sbjct 330325 TCCCGCTTATTCTACACCTTTCATGTCGCTTCACTT-GCCAGACTAGGTAGAGTCAAGCT 330383 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 |||||||||| |||||| ||||||||| |||| |||||||||| ||||||||||| | Sbjct 330384 CAACAGGGTCCATTTTCCCAGCTGATTCCTCCAACCCCGTTCCCTCTGCTGTGGTTTCAC 330443 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | || || | |||||||| ||||||| ||||| || |||||||| | ||||| |||| Sbjct 330444 TGGAGAGACGGTAGGGACACTGGGAATATCGTTTATGCATTCATGGAGGGCACTAGTTAG 330503 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC---CGCCGTTTACCCGC 470 |||| ||||||||| ||||| ||||| ||||| |||||||||| |||| || |||| Sbjct 330504 ATGAGGAGGCATTTAGCTACTTTAAGTGAGTCCTAGTTACTCCTGTCGCCATTCACCCAG 330563 Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 |||| |||||||||||||| ||| |||||| |||| ||||||||||||||| | ||| Sbjct 330564 GCTTCACTGAATTTCTTCACTCTGATATTCAGGGCACGGGGCAGAAATCACATGACATCA 330623 Query 531 AC 532 || Sbjct 330624 AC 330625 >seq3 Length=9617682 Score = 269 bits (298), Expect = 9e-70 Identities = 239/297 (80%), Gaps = 4/297 (1%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||| |||||| | |||| |||| | || |||||||||||||| Sbjct 4697091 CTCCCACTTAG---ACACCTTTTGAGTCTCTTCATTGTTCCAGAATAGAGTCAAGCTCAG 4697147 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 | ||||| ||| | | ||||||| | || | |||||| |||||||||||| ||| | Sbjct 4697148 CGAAGTCTTTTTTTCTCACTGATTCTGTCAGATCTGTTCCCCTGGCTGTGGTTTTGCTGG 4697207 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| || ||||||| ||||||| ||| ||||||||| | ||||||||| ||||| Sbjct 4697208 ATAGTAGGTAAGGACAGTAGGAATCTTGTTCATCCATTCACACATGTCACTAAT-AGATG 4697266 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||||||||||||||||||| |||| ||||||||| || | |||||| | |||| Sbjct 4697267 ACGAGGCATTTGGCTACCTTAAGGGAGTTATAGTTACTTCCATCATTTACCTGTGCTTCA 4697326 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||| |||||||||||| || ||||||||||||| ||||||| Sbjct 4697327 TTGAATTTCTTCACTTTGATATTCAGAGCACTAGGTAGAAATCACATTGTGTCAACA 4697383 >seq407 Length=1696304 Score = 228 bits (252), Expect = 3e-57 Identities = 315/443 (71%), Gaps = 57/443 (13%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| ||||||| ||||||| |||| |||| ||||||||||||||||||| Sbjct 1520741 CTTCTGCTCCACAGGAGGTTTCTGTCCTCCCTGAGCTTGCCTTAGGACACCTGCGTTACC 1520800 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||| ||| ||||||||| ||||||||||||||| || |||| | ||| || Sbjct 1520801 ATTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTC 1520860 Query 127 G-GCCCG-CGA--------AGGACCTTAACGCCAGAAA--ATGGTCGGTGAAGACCAGTT 174 | ||||| | | ||| ||| | |||||| || | | | | | || Sbjct 1520861 GCGCCCGGCCAGTGTGGCCAGGCGCTTGGCTCCAGAAGCGATAGCCCCTCGGGGCTCGTG 1520920 Query 175 C---CGCTTCATTGATTAAGTaaaaaaa------------CGATAAGGGTAGTGGTATTT 219 | ||| ||| | | |||||||||| || |||| ||||||| |||| Sbjct 1520921 CACCCGCCTCACCGGATCAGTAAAAAAAAAAAAAAAAAATCGGTAAGAGTAGTGGGATTT 1520980 Query 220 CACTTGCGCCG--AA-----------ACGG----------------CTCCCACTTATTCT 250 ||| ||| || |||| ||||| |||||||| Sbjct 1520981 CACCAAGGCCCGCAAGGCCGGCGGGGACGGGGGTGATGCCGGAGGCCTCCCGCTTATTCT 1521040 Query 251 ACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC 310 |||||||||| ||| ||||| | | |||||||||||||||||||||||||||||||| Sbjct 1521041 ACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTC 1521100 Query 311 CCCGCTGATTCCGCCAAGCCCG-TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369 |||||||||||||||||||||| ||||||||| |||||||||||| |||||||| ||||| Sbjct 1521101 CCCGCTGATTCCGCCAAGCCCGTTTCCCTTGGTTGTGGTTTCGCTGGATAGTAGGTAGGG 1521160 Query 370 ACAGTGGGAATCTCGTTAATCCA 392 |||||||||||||| || ||||| Sbjct 1521161 ACAGTGGGAATCTCATTCATCCA 1521183 >seq40 Length=5640420 Score = 203 bits (224), Expect = 1e-49 Identities = 222/289 (77%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC-GGACTAGAGTCAAGCTCA 295 |||||||||| |||| ||||| ||| ||||| | | | || || ||||| | ||| Sbjct 4421387 CTCCCACTTAATCTATACCTCCTGTGTCTCTTCACCATGCCAGGTTTATAGTCAGGTTCA 4421328 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 |||| ||||||||| ||| |||| |||||||| ||||||||||||||||||| | Sbjct 4421327 ACAGAGTCTTCTTTGCCCAAAGATTTTGCCAAGCCA-TTCCCTTGGCTGTGGTTTCATCA 4421269 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||| ||| || ||| | ||| || || ||| |||||| | |||| |||||| || Sbjct 4421268 GATAATAGGTAAAAACAATAACAATATCATTCATCTATTCATACACGTCCCTAATTCTAT 4421209 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC-GCCGTTTACCCGCGCTT 474 | |||||||||||||||||||| |||||||||||||| ||| | ||||| |||| Sbjct 4421208 GGTGAGGCATTTGGCTACCTTAACAGAGTCATAGTTACACCCATCAATTTACTTAAGCTT 4421149 Query 475 -GGT--TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 || | ||| |||||||||||||||||||| ||||||||| |||||| Sbjct 4421148 CTGTAGTAAATATCTTCACTTTGACATTCAGATCACTGGGCAAAAATCA 4421100 >seq305 Length=2012256 Score = 176 bits (194), Expect = 1e-41 Identities = 120/134 (90%), Gaps = 7/134 (5%) Strand=Plus/Minus Query 403 TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGT 462 ||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 1392053 TCACTAATTTGATGACGAGGCATTTGGCTACCTTAAAAGAGTCATAGTTAC----GCCGT 1391998 Query 463 TTACCC---GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATC 519 ||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1391997 TTAACCCACGCGCTCCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATC 1391938 Query 520 ACATTGCGTCAACA 533 |||| ||||||||| Sbjct 1391937 ACATCGCGTCAACA 1391924 >seq313 Length=2252533 Score = 123 bits (136), Expect = 8e-26 Identities = 134/173 (77%), Gaps = 11/173 (6%) Strand=Plus/Minus Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTC----CCTTGGCTG 344 ||||||||| |||||| |||| |||||| | ||| ||| ||| ||||||||| Sbjct 527502 AAGCTCAACCAGGTCTT---TCCCTGCTGATACTGCCCAGCTAGTTAATTGCCTTGGCTG 527446 Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 || |||| | |||| ||| ||| ||| |||||||||| ||| || ||||||| || || Sbjct 527445 TG-TTTCA-TGGATACTAGGTAGAGACTGTGGGAATCTTGTTCATTCATTCATAGGCATC 527388 Query 405 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 457 |||| |||||| ||||||| ||||| |||| || |||||||||||||||| Sbjct 527387 ACTATTTAGATAGTGAGGCATATGGCTGCCTT--GACAGTCATAGTTACTCCC 527337 >seq28 Length=6938960 Score = 78.8 bits (86), Expect = 3e-12 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 317 GATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGG 376 |||||||||||||| ||| |||||||||| ||| || ||||| | |||||||||| | Sbjct 2658736 GATTCCGCCAAGCCTGTTTCCTTGGCTGTATTTTTTCTGGATAGCATGTAGGGACAGTAG 2658795 Query 377 GAATCTCGTTAATCCATT 394 ||||||| || |||| || Sbjct 2658796 GAATCTCATTTATCCTTT 2658813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635076199008