Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq4526 298 9e-79 seq2230 226 5e-57 seq283 194 3e-47 seq109 183 5e-44 seq876 109 9e-22 >seq4526 Length=112747 Score = 298 bits (330), Expect = 9e-79 Identities = 245/294 (83%), Gaps = 3/294 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 56987 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 57046 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||| |||||||||| ||||||||||||||||||||||||||| |||| | Sbjct 57047 ACCACGGTCTAAGCCCAGCTCAC-TTCCCTATTAGTGGGTGAACAATCCAAGGCTTGGTG 57105 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||| |||||| ||||| ||||||||||||||| ||||||||| Sbjct 57106 AATTCTGCTTCACAATGATAG-AAGAGCTGACATGGAAGGATCAAAAAGCGACGTCGCTA 57164 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| || Sbjct 57165 TGAACGCTTGGCCGCCACAAGCCAGTTACCCCTGTGGTAACTTTTCTGACACCTCCTGCT 57224 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| |||||| ||| ||||||| Sbjct 57225 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCTCCTTTCACGGTCTGTATTC 57278 >seq2230 Length=431004 Score = 226 bits (250), Expect = 5e-57 Identities = 192/235 (82%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | |||||||| | | || | ||||||| |||||||||||||| || | Sbjct 413549 TACTAAGCAGGATTACCATGGCAACAACACATTATCAGTAAGGTAAAACTAACCTATCCC 413608 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 || | ||||||| |||||||||| || |||| ||||| |||||||||||| || | | Sbjct 413609 ATTATGGTCTAATCCCAGCTCACCTTTCCTACTAGTGAATGAACAATCCAATGCCTGGTG 413668 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||| | ||||| |||||||| |||||||| | | || Sbjct 413669 AATTCTGCTTCATAATGATAGGAAGAGACAACATCAAAGGATCATAAAGCAACATTGTTA 413728 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||| ||||||||||||||||| |||||||||| ||||| ||| || Sbjct 413729 TGAACGCTTGGCCACCACAAGCCAGTTATCCTTGTGGTAACTCTTCTGACACTTC 413783 >seq283 Length=1742228 Score = 194 bits (214), Expect = 3e-47 Identities = 209/273 (77%), Gaps = 14/273 (5%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC----- 86 ||||||||| ||||||||||| |||| ||||| |||||||||||||||| || Sbjct 280097 CATCAGTAGTGTAAAACTAACATGTC-CATGATAGTCTAAACCCAGCTCATGTAAGTGAA 280039 Query 87 ----CCTATTAGTGG-GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGG 141 || ||||||| ||||||||||||| | || |||||||||||| ||||||| Sbjct 280038 CAATCCAATTAGTGAAGTGAACAATCCAATGTTTGGTGAATTCTGCTTCACAGTGATAGG 279979 Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 |||||| ||| | ||| ||||||||||| | | ||| |||| ||||| |||||||||| Sbjct 279978 AAGAGCTGACTTTGAAAGATCAAAAAGCGA--TTGCTGTGAATACTTGGTTGCCACAAGC 279921 Query 202 CAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGG 261 ||||||||||| |||||||||||| |||||| | || ||| | | || | ||| Sbjct 279920 CAGTTATCCCTTTGGTAACTTTTCCAACACCTCCTG-CTGAAAACCCAAAGGTCAGAAGT 279862 Query 262 ATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||| ||||| |||||||||||| ||||| || Sbjct 279861 ATCATGAGGCCCCACTTTCATGGTCTGTATCCA 279829 >seq109 Length=2443272 Score = 183 bits (202), Expect = 5e-44 Identities = 121/133 (91%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 2252991 TCATCAGTAGGGTAAAACTAACCTGTCTCAGGACGGTCTAAAGCCAGCTCACGTTCCCTA 2253050 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||| |||| || ||||||||| ||||| |||||||| || Sbjct 2253051 TTAGTGGGTGAACAATCCAA-GCTTGGTGAGTTCTGCTTCACAATGATGGGAAGAGCTGA 2253109 Query 151 CATCGAAGGATCA 163 ||||||||||||| Sbjct 2253110 CATCGAAGGATCA 2253122 >seq876 Length=946617 Score = 109 bits (120), Expect = 9e-22 Identities = 83/97 (86%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 137 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 196 ||||||||| ||||| ||||||||||||||||| | |||| | | |||||| |||| Sbjct 23140 ATAGGAAGAATAGACATA-AAGGATCAAAAAGCAACCTTGCTAAGCATGCTTGGACGCCA 23082 Query 197 CAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 |||||||||||||||||||||||||||||| ||||| Sbjct 23081 TAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCT 23045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854257221216