Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq4526 298 9e-79
seq2230 226 5e-57
seq283 194 3e-47
seq109 183 5e-44
seq876 109 9e-22
>seq4526
Length=112747
Score = 298 bits (330), Expect = 9e-79
Identities = 245/294 (83%), Gaps = 3/294 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || |||||||||||||||||||||||||||||
Sbjct 56987 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 57046
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||||||||| |||||||||| ||||||||||||||||||||||||||| |||| |
Sbjct 57047 ACCACGGTCTAAGCCCAGCTCAC-TTCCCTATTAGTGGGTGAACAATCCAAGGCTTGGTG 57105
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| ||||||| |||||| ||||| ||||||||||||||| |||||||||
Sbjct 57106 AATTCTGCTTCACAATGATAG-AAGAGCTGACATGGAAGGATCAAAAAGCGACGTCGCTA 57164
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| ||
Sbjct 57165 TGAACGCTTGGCCGCCACAAGCCAGTTACCCCTGTGGTAACTTTTCTGACACCTCCTGCT 57224
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||| | || | |||||||| ||||| |||||| ||| |||||||
Sbjct 57225 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCTCCTTTCACGGTCTGTATTC 57278
>seq2230
Length=431004
Score = 226 bits (250), Expect = 5e-57
Identities = 192/235 (82%), Gaps = 1/235 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||||||| | |||||||| | | || | ||||||| |||||||||||||| || |
Sbjct 413549 TACTAAGCAGGATTACCATGGCAACAACACATTATCAGTAAGGTAAAACTAACCTATCCC 413608
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
|| | ||||||| |||||||||| || |||| ||||| |||||||||||| || | |
Sbjct 413609 ATTATGGTCTAATCCCAGCTCACCTTTCCTACTAGTGAATGAACAATCCAATGCCTGGTG 413668
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| ||||||||||||| | ||||| |||||||| |||||||| | | ||
Sbjct 413669 AATTCTGCTTCATAATGATAGGAAGAGACAACATCAAAGGATCATAAAGCAACATTGTTA 413728
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234
|||||||||||| ||||||||||||||||| |||||||||| ||||| ||| ||
Sbjct 413729 TGAACGCTTGGCCACCACAAGCCAGTTATCCTTGTGGTAACTCTTCTGACACTTC 413783
>seq283
Length=1742228
Score = 194 bits (214), Expect = 3e-47
Identities = 209/273 (77%), Gaps = 14/273 (5%)
Strand=Plus/Minus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC----- 86
||||||||| ||||||||||| |||| ||||| |||||||||||||||| ||
Sbjct 280097 CATCAGTAGTGTAAAACTAACATGTC-CATGATAGTCTAAACCCAGCTCATGTAAGTGAA 280039
Query 87 ----CCTATTAGTGG-GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGG 141
|| ||||||| ||||||||||||| | || |||||||||||| |||||||
Sbjct 280038 CAATCCAATTAGTGAAGTGAACAATCCAATGTTTGGTGAATTCTGCTTCACAGTGATAGG 279979
Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201
|||||| ||| | ||| ||||||||||| | | ||| |||| ||||| ||||||||||
Sbjct 279978 AAGAGCTGACTTTGAAAGATCAAAAAGCGA--TTGCTGTGAATACTTGGTTGCCACAAGC 279921
Query 202 CAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGG 261
||||||||||| |||||||||||| |||||| | || ||| | | || | |||
Sbjct 279920 CAGTTATCCCTTTGGTAACTTTTCCAACACCTCCTG-CTGAAAACCCAAAGGTCAGAAGT 279862
Query 262 ATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
||| ||||| |||||||||||| ||||| ||
Sbjct 279861 ATCATGAGGCCCCACTTTCATGGTCTGTATCCA 279829
>seq109
Length=2443272
Score = 183 bits (202), Expect = 5e-44
Identities = 121/133 (91%), Gaps = 1/133 (1%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 2252991 TCATCAGTAGGGTAAAACTAACCTGTCTCAGGACGGTCTAAAGCCAGCTCACGTTCCCTA 2253050
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||||||||||||||||| |||| || ||||||||| ||||| |||||||| ||
Sbjct 2253051 TTAGTGGGTGAACAATCCAA-GCTTGGTGAGTTCTGCTTCACAATGATGGGAAGAGCTGA 2253109
Query 151 CATCGAAGGATCA 163
|||||||||||||
Sbjct 2253110 CATCGAAGGATCA 2253122
>seq876
Length=946617
Score = 109 bits (120), Expect = 9e-22
Identities = 83/97 (86%), Gaps = 1/97 (1%)
Strand=Plus/Minus
Query 137 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 196
||||||||| ||||| ||||||||||||||||| | |||| | | |||||| ||||
Sbjct 23140 ATAGGAAGAATAGACATA-AAGGATCAAAAAGCAACCTTGCTAAGCATGCTTGGACGCCA 23082
Query 197 CAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233
|||||||||||||||||||||||||||||| |||||
Sbjct 23081 TAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCT 23045
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854257221216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |