Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1641 374 3e-101 seq630 367 4e-99 seq2797 354 3e-95 seq378 266 1e-68 seq960 257 5e-66 seq758 241 4e-61 seq1244 210 7e-52 seq528 172 2e-40 seq4526 87.8 6e-15 >seq1641 Length=668455 Score = 374 bits (414), Expect = 3e-101 Identities = 237/257 (92%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 |||||||||||||||||||||| ||| |||| | | ||||||||||||||||||| Sbjct 354801 CCCACTTATTCTACACCTCTCATGTCTCCTCACTGTGCCAAACTAGAGTCAAGCTCAACA 354742 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 354741 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGAT 354682 Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||| |||||||||||||||||||||| ||||||||||||| ||| ||||||||||||| Sbjct 354681 AGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGGGTCGCTAATTAGATGAC 354622 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 |||||||||||||||||||||||||||||||||||| | |||||||||| |||||| || Sbjct 354621 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTGCTGCCGTTTACCTGCGCTTCATT 354562 Query 479 GAATTTCTTCACTTTGA 495 ||||||||||||||||| Sbjct 354561 GAATTTCTTCACTTTGA 354545 >seq630 Length=1120681 Score = 367 bits (406), Expect = 4e-99 Identities = 233/253 (92%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||| ||||||||||||| ||| ||||| | | |||||||||||||||| | Sbjct 870423 CTCCCACTTACTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCTA 870482 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||| ||||||||||||||||||||| |||||||||||||||||||||||||| | || | Sbjct 870483 CAGGTTCTTCTTTCCCCGCTGATTCCACCAAGCCCGTTCCCTTGGCTGTGGTTCCTCTGG 870542 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 870543 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCATCACTAATTAGATG 870602 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 870603 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCA 870662 Query 477 TTGAATTTCTTCA 489 ||||||||||||| Sbjct 870663 TTGAATTTCTTCA 870675 >seq2797 Length=342856 Score = 354 bits (392), Expect = 3e-95 Identities = 258/297 (87%), Gaps = 3/297 (1%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 204226 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACTGTGCCAGACTAGAGTCAAGCTCAA 204285 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||| ||||||||||| ||||||| ||||| ||| |||||| |||||||||||| || | Sbjct 204286 CAGAATCTTCTTTCCCA-CTGATTCTGCCAAACCCATTCCCTGGGCTGTGGTTTCACTGG 204344 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||| ||||||| ||| ||| |||||||||| | |||||||||||||||| Sbjct 204345 ATAGTAGGTAGGGATAGTGGGACTCTTGTTCATCCATTCATACACGTCACTAATTAGATG 204404 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | ||||||||||||| |||||||||||| |||||||||| |||||||||| ||||| Sbjct 204405 ATGAGGCATTTGGCTCTCTTAAGAGAGTC--AGTTACTCCCACCGTTTACCCACGCTTCA 204462 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||| ||| |||||| |||||||||||| || |||||| Sbjct 204463 TTGAATTTCTTCACTTTGACATTTAGAACACTGGACAGAAATCACATCGCATCAACA 204519 >seq378 Length=1430629 Score = 266 bits (294), Expect = 1e-68 Identities = 244/303 (81%), Gaps = 8/303 (3%) Strand=Plus/Plus Query 224 TGCGCCGAAACGGCT-CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC-GGAC 281 ||| || | | |||| |||||||| ||||||| || | ||| | ||| | ||| || Sbjct 145299 TGCCCCCACAGGGCTTCCCACTTAATCTACACTTCCTATGTCTCTGCACCATGTCAGGTT 145358 Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 || ||| ||||||| ||||||||| || | |||| | ||||| ||||||||| Sbjct 145359 TACAGTT----TCAACAGAGTCTTCTTTGACCACAGATTTTTCTAAGCCA-TTCCCTTGG 145413 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA-TCTCGTTAATCCATTCATGCG 400 |||||||||| ||||| ||| || |||||||| || | || || |||||||||||| Sbjct 145414 CTGTGGTTTCATCAGATAATAGCTAAAGACAGTGGAAAATATCATTCATCCATTCATGCA 145473 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 ||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 145474 TGTCCCTAATTAGATGGTGGAGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 145533 Query 461 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||||||||||||| ||||||||||||||||||||||||||| |||| |||| |||||| Sbjct 145534 GTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAACACTAGGCAAAAATCA 145593 Query 521 CAT 523 ||| Sbjct 145594 CAT 145596 >seq960 Length=931928 Score = 257 bits (284), Expect = 5e-66 Identities = 182/206 (88%), Gaps = 7/206 (3%) Strand=Plus/Plus Query 336 CCTTGG-CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 |||||| |||||||||| ||||||||||| |||||||||||||||||||||| ||||||| Sbjct 539162 CCTTGGTCTGTGGTTTCTCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATT 539221 Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 ||| || | ||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 539222 CATATGCATTACTAATTAGATGA---GGCATTTGGCTACCTTAAGAGAGTCATAGTTGCT 539278 Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 || ||| ||||| |||||| ||||| ||||||||||||||||| |||||||||||||| Sbjct 539279 CCTGCCATTTACTTGCGCTTCATTGAACTTCTTCACTTTGACATTGAGAGCACTGGGCAG 539338 Query 515 AAATCACATTGCGTC---AACATCAC 537 |||||||||||||| |||||||| Sbjct 539339 GAATCACATTGCGTCAAGAACATCAC 539364 >seq758 Length=958628 Score = 241 bits (266), Expect = 4e-61 Identities = 234/304 (77%), Gaps = 33/304 (11%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAA----GC 292 |||||||| ||| |||||||||| |||| ||||| | | | |||||||| || || Sbjct 527851 CTCCCACTCATTTTACACCTCTCCTGTCACTTCACCATGCCACACTAGAGTGAATGAAGC 527910 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 ||||||||||| ||||||| || ||||| ||||||||||||| | Sbjct 527911 TCAACAGGGTCGTCTTTCC------AT------------GTTCCTTTGGCTGTGGTTTTG 527952 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 || |||||||| |||||||||||||||||| ||| | || || |||||||||| Sbjct 527953 CTGGATAGTAGGTAGGGACAGTGGGAATCTTGTT--------CCTGTGCATCACTAATTA 528004 Query 413 ---GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469 | || ||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 528005 TTAGGTGGTGAGGCATTTGGCTACCTTAAGAGAGTCCTAGTTACTCCCATGATTTACCCA 528064 Query 470 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTC 529 |||| ||||||||||||||||||||||| |||||||||| |||||||||||| ||| Sbjct 528065 GGCTTCATTGAATTTCTTCACTTTGACATTTAGAGCACTGGCCAGAAATCACATCATGTC 528124 Query 530 AACA 533 |||| Sbjct 528125 AACA 528128 >seq1244 Length=797082 Score = 210 bits (232), Expect = 7e-52 Identities = 167/198 (84%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCA 396 ||||||||||| || || || ||||| |||||||||||||||||| || |||||||| Sbjct 679254 CTTGGCTGTGGCTTTACTGGACAGTAGGTAGGGACAGTGGGAATCTAATTTATCCATTCG 679195 Query 397 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 ||| | ||| |||||||||||| ||||||||||||||||||| | ||||||||||||||| Sbjct 679194 TGCACATCATTAATTAGATGACAAGGCATTTGGCTACCTTAAAAAAGTCATAGTTACTCC 679135 Query 457 CGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516 |||| ||||| | || | ||||||||||||| ||||||||||||| |||| ||||| Sbjct 679134 CGCCATTTACTCATGC-TCATTGAATTTCTTCATTTTGACATTCAGAATGCTGGACAGAA 679076 Query 517 ATCAC-ATTGCGTCAACA 533 ||||| || | ||||||| Sbjct 679075 ATCACAATGGTGTCAACA 679058 >seq528 Length=1277831 Score = 172 bits (190), Expect = 2e-40 Identities = 128/150 (85%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||| | | | | | |||||||||| ||||| Sbjct 1270827 CTCCCACTTATTCTACACCTCTCATGTCTCTTCCCCATGCCAGGCTAGAGTCAAACTCAA 1270886 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||| |||| ||||| | ||||||| ||||| || | ||||||||||||||||||||| | Sbjct 1270887 CAGGATCTTTTTTCCTCACTGATTCTGCCAAACCTGGTCCCTTGGCTGTGGTTTCGCTGG 1270946 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTT 386 ||||||| |||||| ||||||||||| ||| Sbjct 1270947 ATAGTAGGTAGGGATAGTGGGAATCTTGTT 1270976 >seq4526 Length=112747 Score = 87.8 bits (96), Expect = 6e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 57615 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 57674 Query 297 CAGGGTCT 304 |||||||| Sbjct 57675 CAGGGTCT 57682 Score = 86.0 bits (94), Expect = 2e-14 Identities = 96/128 (75%), Gaps = 9/128 (7%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| |||| ||||||| |||| |||| | ||||||||||||| |||| Sbjct 57312 CTTCTGCTCCTTGGGAGGTTTCTGTCCTCCCTGAGCTCGTCTTAGGACACCTGTGTTACC 57371 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||| |||||||||||||||| || |||| |||||| | Sbjct 57372 GTTTGACAGGTGTACCGCC----CCAAACTCCCCACCTGGCACTGTC-----CCCGGAGC 57422 Query 127 GGCCCGCG 134 || |||| Sbjct 57423 GGGTCGCG 57430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634926741728