Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq4526 82.4 1e-13 seq328 80.6 4e-13 seq109 77.0 5e-12 seq451 73.4 6e-11 >seq4526 Length=112747 Score = 82.4 bits (90), Expect = 1e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || |||||||||||||||| |||||||| |||||||||||||| Sbjct 56947 TGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAA 56888 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 56887 GTCAGAATCC 56878 >seq328 Length=1591427 Score = 80.6 bits (88), Expect = 4e-13 Identities = 67/81 (83%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 39 TGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGC 98 || || || |||| || ||||| || ||||||||||||| |||||||| ||||| || Sbjct 446531 TGTGGTTGGCTGAAGAGCCAGTGGGGCAAAGCTACCATCTGTGGGATTATGACTGAATGC 446590 Query 99 CTCTAAGTCAGAATCCATGCC 119 |||||||||||||||| |||| Sbjct 446591 CTCTAAGTCAGAATCC-TGCC 446610 >seq109 Length=2443272 Score = 77.0 bits (84), Expect = 5e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || |||||||||||||||| |||||||| |||||||||||||| Sbjct 2252930 TGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAA 2252871 Query 105 GTCAGAATCC 114 || ||||||| Sbjct 2252870 GTTAGAATCC 2252861 >seq451 Length=1220489 Score = 73.4 bits (80), Expect = 6e-11 Identities = 62/75 (83%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || ||||||||||||| || |||||||| |||||| ||||||| Sbjct 974941 TGGCTGAGGAGCCAATGGGGCGAAGCTACCATTTGTGGGATTATGACTGAACACCTCTAA 974882 Query 105 GTCAGAATCCATGCC 119 |||||||||| |||| Sbjct 974881 GTCAGAATCC-TGCC 974868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819067381504