Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq751 122 3e-25 seq2049 91.5 4e-16 seq945 80.6 8e-13 >seq751 Length=1050645 Score = 122 bits (134), Expect = 3e-25 Identities = 117/146 (80%), Gaps = 7/146 (5%) Strand=Plus/Plus Query 4 CTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||| | || || |||| ||||||| | || |||||| ||| |||| Sbjct 1037236 CTCATTCCAATTACAGGGCCTCAGAAGACTCCTGTATTATTA-TTATTG---CTATCTCC 1037291 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 | ||||||| |||||||||| || |||||||||| | ||||| ||||| || |||| Sbjct 1037292 C--GGTCGGGAGGGGGTAATTTGTGCACCTGCTGCCTGCTTTGGACGTGGTCGCTGTTTT 1037349 Query 123 TCAGGCTCCCTCTCCGGAATCGAACC 148 |||| ||||||||| |||||| |||| Sbjct 1037350 TCAGCCTCCCTCTCTGGAATCAAACC 1037375 >seq2049 Length=615634 Score = 91.5 bits (100), Expect = 4e-16 Identities = 107/145 (74%), Gaps = 11/145 (8%) Strand=Plus/Plus Query 49 TTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGA- 107 |||||| ||| | || | ||| ||| || ||||| || | ||||||||||||||||||| Sbjct 556331 TTGTCATTACTTTCCTGGGTCAGGAGTGAGTAATCTGTGAGCCTGCTGCCTTCCTTGGAA 556390 Query 108 ---------TGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 |||||||| ||||||||||||||||| | |||| || |||||| || Sbjct 556391 ACTAGAAACAATGGTAGCCATTTCTCAGGCTCCCTCTTTGAAATCAAATGCTAATT-CCT 556449 Query 159 GTTACCCGTTGATACCATGGTAGGC 183 | | |||| | |||||||||||| Sbjct 556450 TTCATCCGTGGTCACCATGGTAGGC 556474 >seq945 Length=1005071 Score = 80.6 bits (88), Expect = 8e-13 Identities = 84/108 (78%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 76 GGGTAATTTGCGCGCCTGCT-GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 ||| ||||||| | |||||| |||||||||||| | | |||| |||| |||| ||||||| Sbjct 834072 GGGCAATTTGCACACCTGCTTGCCTTCCTTGGACGGGATAGCTGTTTGTCAGACTCCCTC 834013 Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 ||| || || | || ||||||| | | ||| || | || ||||||| Sbjct 834012 TCCTGACAGGAGCTCTGATTCCCCATCA-CCGATGGTTCCGTGGTAGG 833966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510147597056