Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq19 167 2e-36 seq348 111 1e-19 seq674 95.1 1e-14 >seq19 Length=4596781 Score = 167 bits (184), Expect = 2e-36 Identities = 595/915 (65%), Gaps = 29/915 (3%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || ||| || ||| || ||| |||| || || | ||||| ||||||| | Sbjct 3965713 ATGAGCCACTACTGAGAGAAAACCCT-GTCGCTTTGTCATCTTCCCTGTCGAGTACCTTG 3965655 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 ||||||||| ||||| | || || || |||||||| ||||| | || ||||| ||| Sbjct 3965654 ATATTTGGCAGATGTATGAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAGGTGGATC 3965595 Query 61145 TGTCCAAAGACATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAA 61202 | ||||| ||||| | || ||| | | | | | || || || || || Sbjct 3965594 TTTCCAAGGACATTCAGCACCAGGAATCCCTGAAGCCTGAGGAGAGATACTTTCTATCCC 3965535 Query 61203 ACATGTGTTGGCGTTCTTTG--CCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAA 61260 || || |||| ||||||| ||| | || || || || ||||| || || |||| Sbjct 3965534 AC--GTTCTGGCTTTCTTTGTGCCGAGT--GATGGCATAGTAAATGAAAACTTGGTGGAG 3965479 Query 61261 CG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGC 61319 || ||| || || || || || | | || || || |||||||| |||||||| ||||| Sbjct 3965478 CGGTTTAGC-CAAGAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGC 3965420 Query 61320 CATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCG 61379 |||||| || |||| || |||||||||||| | ||||| || | ||| | | || Sbjct 3965419 CATGGAAAACATCCATTCTGAGATGTACAGTCTCCTCATTGACAGTTACGTTAAAGATTC 3965360 Query 61380 GGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGC 61439 | ||| | ||| | ||||| ||| || |||| || || || ||| || || Sbjct 3965359 CGAAGAAAGGGAATTTCTCTTCAACGCCCTCCAGACAATGCCTTGTGTAAAG---AAGGC 3965303 Query 61440 GGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGC 61499 || |||||||| |||||| | | | |||||| | || ||||| | ||| Sbjct 3965302 AGACTGGGCCTTGCATTGGACTGGCGACAAAGAGGCTACCTACGGGGAACGGGTTGTGGA 3965243 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 ||||| | || || || | || || ||| || ||||| | || || ||| | || Sbjct 3965242 CTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGACGATATTCTGGCTCAA 3965183 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGACGAGG 61618 |||||| | || ||||| || ||||| || |||||| | || | || | || |||| Sbjct 3965182 GAAACGCGACCTGATGCCTGG-CTGACGTTTTCCAATGAACTTATTAGCA-GAGATGAGG 3965125 Query 61619 GCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGG 61678 | | || ||||| ||||| || | ||||||| | ||||| | || || Sbjct 3965124 GTTTACACTGTGACTTTGCCTGCCTGATGTTCAAAC---AACTGGTCCACAAACCTTCCA 3965068 Query 61679 AGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTG 61738 || || | ||| || || || | | || || || || |||| || || || | Sbjct 3965067 AGCAGAGAGTGAAGGAAATAATTATTAATGCCGTTCGGATAGAGCAGGGGTTCCTCACGG 3965008 Query 61739 ACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAAT 61798 | | ||||| || ||||| | |||||||| ||||| |||||||||||| | Sbjct 3965007 AGACCTTGCCTGTGAAGCTCATTAGGATGAATTGCACGTTAATGAAGCAGTATATTGAGT 3964948 Query 61799 TTGTTGCCGACCGTCTGTTGGTCGATTTGGGTAT--GAAGCGGATCTATAATACGAAAAA 61856 | || || ||||| || || | || | ||| | | | | | | | || |||| Sbjct 3964947 TCGTGGCAGACCGACTTATGCTGGAGCTAGGTTTTGGCAAGGTTTTCAGAGTA--GAAAA 3964890 Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916 |||||||| |||||||| | ||||| |||| ||| ||| || || || || | Sbjct 3964889 TCCATTTGACTTCATGGAGAATATTTCACTGG-----AAGGGGAACTTCTTTGAAAAGAG 3964835 Query 61917 TGTAGGCGACTATCA 61931 ||||| || ||||| Sbjct 3964834 AGTAGGTGAGTATCA 3964820 >seq348 Length=1658837 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| |||||||| || ||||| || || |||| ||||| || Sbjct 297563 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTG 297504 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||||||||| || || ||||| || Sbjct 297503 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 297444 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 297443 AGACTCAATGATGGCATACCAAAG 297420 >seq674 Length=1058379 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 |||||||| || || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 553462 CAGGAGGTACAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 553521 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 553522 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 553568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397487029189040