Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq19 167 2e-36
seq348 111 1e-19
seq674 95.1 1e-14
>seq19
Length=4596781
Score = 167 bits (184), Expect = 2e-36
Identities = 595/915 (65%), Gaps = 29/915 (3%)
Strand=Plus/Minus
Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084
|||| || ||| || ||| || ||| |||| || || | ||||| ||||||| |
Sbjct 3965713 ATGAGCCACTACTGAGAGAAAACCCT-GTCGCTTTGTCATCTTCCCTGTCGAGTACCTTG 3965655
Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144
||||||||| ||||| | || || || |||||||| ||||| | || ||||| |||
Sbjct 3965654 ATATTTGGCAGATGTATGAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAGGTGGATC 3965595
Query 61145 TGTCCAAAGACATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAA 61202
| ||||| ||||| | || ||| | | | | | || || || || ||
Sbjct 3965594 TTTCCAAGGACATTCAGCACCAGGAATCCCTGAAGCCTGAGGAGAGATACTTTCTATCCC 3965535
Query 61203 ACATGTGTTGGCGTTCTTTG--CCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAA 61260
|| || |||| ||||||| ||| | || || || || ||||| || || ||||
Sbjct 3965534 AC--GTTCTGGCTTTCTTTGTGCCGAGT--GATGGCATAGTAAATGAAAACTTGGTGGAG 3965479
Query 61261 CG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGC 61319
|| ||| || || || || || | | || || || |||||||| |||||||| |||||
Sbjct 3965478 CGGTTTAGC-CAAGAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGC 3965420
Query 61320 CATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCG 61379
|||||| || |||| || |||||||||||| | ||||| || | ||| | | ||
Sbjct 3965419 CATGGAAAACATCCATTCTGAGATGTACAGTCTCCTCATTGACAGTTACGTTAAAGATTC 3965360
Query 61380 GGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGC 61439
| ||| | ||| | ||||| ||| || |||| || || || ||| || ||
Sbjct 3965359 CGAAGAAAGGGAATTTCTCTTCAACGCCCTCCAGACAATGCCTTGTGTAAAG---AAGGC 3965303
Query 61440 GGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGC 61499
|| |||||||| |||||| | | | |||||| | || ||||| | |||
Sbjct 3965302 AGACTGGGCCTTGCATTGGACTGGCGACAAAGAGGCTACCTACGGGGAACGGGTTGTGGA 3965243
Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559
||||| | || || || | || || ||| || ||||| | || || ||| | ||
Sbjct 3965242 CTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGACGATATTCTGGCTCAA 3965183
Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGACGAGG 61618
|||||| | || ||||| || ||||| || |||||| | || | || | || ||||
Sbjct 3965182 GAAACGCGACCTGATGCCTGG-CTGACGTTTTCCAATGAACTTATTAGCA-GAGATGAGG 3965125
Query 61619 GCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGG 61678
| | || ||||| ||||| || | ||||||| | ||||| | || ||
Sbjct 3965124 GTTTACACTGTGACTTTGCCTGCCTGATGTTCAAAC---AACTGGTCCACAAACCTTCCA 3965068
Query 61679 AGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTG 61738
|| || | ||| || || || | | || || || || |||| || || || |
Sbjct 3965067 AGCAGAGAGTGAAGGAAATAATTATTAATGCCGTTCGGATAGAGCAGGGGTTCCTCACGG 3965008
Query 61739 ACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAAT 61798
| | ||||| || ||||| | |||||||| ||||| |||||||||||| |
Sbjct 3965007 AGACCTTGCCTGTGAAGCTCATTAGGATGAATTGCACGTTAATGAAGCAGTATATTGAGT 3964948
Query 61799 TTGTTGCCGACCGTCTGTTGGTCGATTTGGGTAT--GAAGCGGATCTATAATACGAAAAA 61856
| || || ||||| || || | || | ||| | | | | | | | || ||||
Sbjct 3964947 TCGTGGCAGACCGACTTATGCTGGAGCTAGGTTTTGGCAAGGTTTTCAGAGTA--GAAAA 3964890
Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916
|||||||| |||||||| | ||||| |||| ||| ||| || || || || |
Sbjct 3964889 TCCATTTGACTTCATGGAGAATATTTCACTGG-----AAGGGGAACTTCTTTGAAAAGAG 3964835
Query 61917 TGTAGGCGACTATCA 61931
||||| || |||||
Sbjct 3964834 AGTAGGTGAGTATCA 3964820
>seq348
Length=1658837
Score = 111 bits (122), Expect = 1e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||||||||| || ||||| |||||||| || ||||| || || |||| ||||| ||
Sbjct 297563 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTG 297504
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| ||||| || | ||| ||||| | ||||||||| || || ||||| ||
Sbjct 297503 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 297444
Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192
|||||||||||||| | ||||||
Sbjct 297443 AGACTCAATGATGGCATACCAAAG 297420
>seq674
Length=1058379
Score = 95.1 bits (104), Expect = 1e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
|||||||| || || | ||||| || |||||||| ||||| || ||| ||| ||||||
Sbjct 553462 CAGGAGGTACAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 553521
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
|| ||||| |||||||||||| | || || || || |||||||| ||
Sbjct 553522 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 553568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397487029189040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |