Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq29572 174 2e-41 seq29577 159 5e-37 seq21249 102 1e-19 seq9044 96.9 5e-18 >seq29572 Length=8466069 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| || || ||||| ||| |||||| |||||| | Sbjct 5821930 GTACAAAGGGCAGGGACTTAATCAACGCAAGATT-ATGACCCGCACTTACTGGGAATT-C 5821873 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 |||||| | | || ||||||||| | |||||||| |||| || ||| | || || Sbjct 5821872 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATTACGAATGGGATTCAACAGGTT 5821813 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 5821812 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 5821753 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 5821752 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 5821700 >seq29577 Length=937630 Score = 159 bits (176), Expect = 5e-37 Identities = 183/236 (78%), Gaps = 9/236 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 137987 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 137930 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| ||||||| ||||| | || Sbjct 137929 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCC-ATCACGAATGGGGTTCAACGGGTT 137871 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAG--ACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||||| |||| | || || || ||| || || ||| ||||||||||||||||| Sbjct 137870 ACCCGCGCCTGCCAGCGTAG-TG-TAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTG 137813 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 | |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 137812 CAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 137758 >seq21249 Length=1240507 Score = 102 bits (112), Expect = 1e-19 Identities = 156/218 (72%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || | || ||||| |||| | | |||||| |||||| | Sbjct 37668 GTACAAAGGGCAGGGACTTAAT----GCAAGCTTC-TGACCCACACTTACTGGGAATT-C 37615 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 ||| | | | || ||| ||| | | ||||||||||| | || ||| | || Sbjct 37614 CTCACTCATGGGGAATAATGGCAGTCCCCCATCCCCATCACAAATGGGATTCAGTGGGTT 37555 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | |||| | || ||| | || || ||| |||||||||||||||||| Sbjct 37554 ACCTGCTCCTGCCAGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 37495 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||| ||||||||||||||| ||||||||||| Sbjct 37494 GCCCCGGACACCTAAGGGCATCACAGCCCTGTTATTGC 37457 >seq9044 Length=2178216 Score = 96.9 bits (106), Expect = 5e-18 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 5 AAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCG 64 ||||||||||||| || ||| ||| | ||| | ||| || || ||| |||||| ||| | Sbjct 2125356 AAAGGGCAGGGACTTAATCACCGCAAACTT-ACGACCTGCACTCACTGGGAATT-CCTTG 2125299 Query 65 TTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATTACCC 123 || | | || ||||||||| | |||||||||||| || || || | |||| Sbjct 2125298 TTCATGGGCAGTAATTGCAATCCACGGTCCCCATCACGAATGGGGTTCCATGGGTTACTG 2125239 Query 124 GGACCTGTCGGCCAAGGTGATAG--ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGC 181 | |||| || | || ||| || || ||| | ||||||| | | |||| || Sbjct 2125238 GAGCCTGCTGGTGTA--TGGTAGGCACACGCTGAGCCCGCCAGTGTATCTTGTGTGCAGC 2125181 Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 || ||||| ||||||||||||||||| |||||||| ||||| || ||||| Sbjct 2125180 CCCGAACAGCTAAGGGCATCACAGACGTGTTATTG-CTCAATCTCGGGTGGC 2125130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751776255795