Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq30698 149 3e-33 seq17321 149 3e-33 seq21249 132 2e-28 seq15337 122 4e-25 seq460 78.8 4e-12 >seq30698 Length=1458934 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 623140 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 623199 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 623200 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 623259 >seq17321 Length=2090019 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 570654 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 570595 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 570594 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 570535 >seq21249 Length=1240507 Score = 132 bits (146), Expect = 2e-28 Identities = 102/120 (85%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| |||||||||||||| ||| Sbjct 41849 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAA--CTG 41906 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| || || | ||||||||||||||| Sbjct 41907 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCATCCCACCTGGGTATAGGGGCGA 41966 >seq15337 Length=5198 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 4386 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 4327 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 4326 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 4267 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 4266 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 4227 >seq460 Length=2176686 Score = 78.8 bits (86), Expect = 4e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||||| |||||||||||||||||||| ||| ||||| |||||||||||||||||||| Sbjct 1987807 GACCCAAAAGATGGTGAACTATGCCTAGGCAGGATGAAGACAGAGGAAACTCTGGTGGAG 1987866 Query 630 G 630 | Sbjct 1987867 G 1987867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079341206150