Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq487 152 7e-35 >seq487 Length=3340 Score = 152 bits (168), Expect = 7e-35 Identities = 185/250 (74%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| |||||||||||||||| || ||||| || |||| | || || ||| Sbjct 2204 TTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 2146 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | |||||||||| ||||||||||| | || | ||||| || | ||||| | Sbjct 2145 GTGCTGTGTTTTTGATAAACAGTCGCAGCGGCCTGGTTACTGCGGCCCTCTTCAGCTATA 2086 Query 122 ---CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCG 178 | | | ||||| | ||| | ||||||||||||||||||| ||||| ||||| Sbjct 2085 GCTCGCATGAGCCACCAAAAAGGGCGCACCTTCTCCCGAAGTTACGGTGCCATGTTGCCT 2026 Query 179 AATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCG 238 | |||||| ||| ||||| | | | ||||| || |||||| ||| |||||||||||| Sbjct 2025 AGTTCCTTCACCCGAGTTCTCTCAAGCGCCTGAGAATTCTCATCCTACCCACCTGTGTCG 1966 Query 239 GTTTACGGTA 248 |||||||||| Sbjct 1965 GTTTACGGTA 1956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694193393649