Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq21249 197 2e-48 seq29577 116 6e-24 seq29572 116 6e-24 seq499 111 3e-22 seq167 104 4e-20 seq9044 89.7 8e-16 seq2971 86.0 1e-14 >seq21249 Length=1240507 Score = 197 bits (218), Expect = 2e-48 Identities = 197/250 (79%), Gaps = 9/250 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||| ||||||||||||||| ||||||||||| | Sbjct 37514 GTCAGTGTAGCGCGCGTGCAGCCCCGGACACCTAAGGGCATCACAGCCCTGTTATTGC-T 37456 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA--CCAACC---- 128 || ||| | ||| ||| | |||| ||||| ||| | | |||||| Sbjct 37455 CAGTCTTGGGTAA-CTGATCACCACTTGTCCGTCTAAAAAGTTGGGGATGCCAACCGCTC 37397 Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | || || ||| |||||| || | ||||| |||||||||||||||||||||||| Sbjct 37396 AGTGTTCATTAA-CTAGTTAGCATGTCAGAGTCTCATTCGTTATCGGAATTAACCAGACA 37338 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 | || |||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 37337 AGTCGCTCCACCAGCTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTA 37278 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 37277 TCAATCTGTC 37268 >seq29577 Length=937630 Score = 116 bits (128), Expect = 6e-24 Identities = 88/101 (87%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| || Sbjct 137830 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 137772 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | || |||||| | |||| | |||||||||||||| Sbjct 137771 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAG 137732 >seq29572 Length=8466069 Score = 116 bits (128), Expect = 6e-24 Identities = 88/101 (87%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| || Sbjct 5821772 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 5821714 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | || |||||| | |||| | |||||||||||||| Sbjct 5821713 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAG 5821674 >seq499 Length=2255841 Score = 111 bits (122), Expect = 3e-22 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 1444292 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 1444351 Query 202 ACTAAGAACGGCCATGCACCA 222 ||||||| ||||||||||||| Sbjct 1444352 ACTAAGATCGGCCATGCACCA 1444372 >seq167 Length=1357166 Score = 104 bits (114), Expect = 4e-20 Identities = 144/195 (74%), Gaps = 10/195 (5%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||| ||||| ||| | |||||||||| |||||||||||||||||| || Sbjct 69554 GTCAGTGTAGCGTGCGTGTAGCCATGGACATCTAAGGTAATCACAGACCTGTTATTG-CT 69612 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACC-AACCAT 130 ||| | || |||||| | |||| | ||||||||||||| | || | || || | Sbjct 69613 CAATC-TCGGGTGGCTGAAGGCCACTTGTCCCTCTAAGAAGTTGGAAGACGCCAAATGCT 69671 Query 131 AGTCG---ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | || ||| | || |||||| | || |||| || ||||| |||||||| |||| Sbjct 69672 TGGCGGTTATGTGACT-GTTAGCATGCTAGAGTCTTATTTGTTATTGGAATTAAGTAGAC 69730 Query 188 AAATCACTCCACCAA 202 | || ||||||||| Sbjct 69731 AGATTGCTCCACCAA 69745 >seq9044 Length=2178216 Score = 89.7 bits (98), Expect = 8e-16 Identities = 83/103 (81%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 ||| ||||||| | | |||| |||| ||||| ||||||||||||||||| |||||||| Sbjct 2125204 CCGCCAGTGTATCTTGTGTGCAGCCCCGAACAGCTAAGGGCATCACAGACGTGTTATTG- 2125146 Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||| | || |||||| | |||| | |||| ||||||||| Sbjct 2125145 CTCAATC-TCGGGTGGCTGAATGCCACTTGTCCTTCTAAGAAG 2125104 >seq2971 Length=1532903 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/116 (77%), Gaps = 7/116 (6%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| || | ||| ||||||||||||||||| ||||| Sbjct 1431792 CTAGTTAGCATGCCAGAGTCTCATTTGGTATAGGAATTAACCAGACAAACGTTTCCACTC 1431851 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 | |||||| ||||| |||||||| ||||||||||||| |||||||| |||| Sbjct 1431852 ATTAAGAA------TGCAC-ACCACCCACAGAATCAAGAAAGTGCTATCAACCTGT 1431900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796562926353