Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq15337 351 2e-94 seq23370 181 2e-43 seq17107 172 9e-41 seq11385 170 3e-40 seq15537 105 1e-20 seq487 73.4 7e-11 >seq15337 Length=5198 Score = 351 bits (388), Expect = 2e-94 Identities = 255/294 (87%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 316 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 375 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 376 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 435 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 436 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 495 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 496 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 555 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 556 TAAAACCCCAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 609 >seq23370 Length=4990973 Score = 181 bits (200), Expect = 2e-43 Identities = 200/264 (76%), Gaps = 3/264 (1%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||||| ||||| || ||||||| ||||| || ||||||||||||||||| || Sbjct 2036155 ATCAGTAGGGTGAAACTCACGTGTCTCACGACGGAGAAATCCCAGCTCACGTTCCCTGTT 2036096 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 |||||||||||||||||| |||| || | |||||| ||||||||||||||| || Sbjct 2036095 AGTGGGTGAACAATCCAATGCTTGGTAAACTGTGCTTCACAATGATAGGAAGAGCCAACG 2036036 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA--TCC 210 | || | ||||||| | |||||||||| |||| | ||||||| |||||| | Sbjct 2036035 GC-AAATACGGAAAAGCAGCATCGCTATGAATGCTTCGTCACCACAAGTCAGTTATGTAG 2035977 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 || |||||||||||||| |||||| | | ||| | | || | ||||| | ||| Sbjct 2035976 CTCTGGTAACTTTTCTGACACCTCCTACTTAAAACTCAAAAGGTCAGGAGGATTGTGAGG 2035917 Query 271 CCACACTTTCATGGTTTGTATTCA 294 || |||||||| || || ||||| Sbjct 2035916 CCCCACTTTCACAGTCTGGATTCA 2035893 >seq17107 Length=2850787 Score = 172 bits (190), Expect = 9e-41 Identities = 131/155 (85%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197 |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 671199 TAGGCAGAGCTGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCAC 671140 Query 198 AAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTA 257 |||||||||||||||||||||||||||||| |||||| || | ||| | | || | Sbjct 671139 AAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGGTCAG 671080 Query 258 AAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 |||||||| |||| | |||||| ||| |||||| Sbjct 671079 AAGGATCGTGGGGCCCCGCTTTCACGGTCTGTATT 671045 >seq11385 Length=11539319 Score = 170 bits (188), Expect = 3e-40 Identities = 115/129 (89%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164 ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 3563113 ATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCAAAGGATCAA 3563054 Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 |||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |||| Sbjct 3563053 AAAGTGACGTCGCTATGGACGCTTGGCCACCACAAGCCAGTTATCCCTGTGGTAATTTTT 3562994 Query 225 CTGGCACCT 233 ||| ||||| Sbjct 3562993 CTGACACCT 3562985 >seq15537 Length=4864269 Score = 105 bits (116), Expect = 1e-20 Identities = 143/194 (74%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||| ||||||||| | ||||| || | || | |||| ||||| ||| || Sbjct 4147919 TCATCAGTCAGGTAAAACTGTTTTATCTCACGATAGCCTGATCCCACCTCACATTCT-TA 4147861 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||| ||||||||||||||| || | |||||||| || || ||| ||| || Sbjct 4147860 TTAGTAGGTGAACAATCCAACACTGGGTAAGGTCTGCTTC---ATAAT--GAAAAGCTGA 4147806 Query 151 CATCGAAGGATCAAAAAGCA-ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||| ||||| |||||||| | || ||||||||| ||||| |||| |||||||| Sbjct 4147805 TATCCAAGGACTAAAAAGCAGAAGT-GCTATGAACACTTGGTCAACACATTGCAGTTATC 4147747 Query 210 CCTGTGGTAACTTT 223 | |||| ||||||| Sbjct 4147746 CTTGTGATAACTTT 4147733 >seq487 Length=3340 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| || ||||| | || Sbjct 2955 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACC 2896 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||||| | | || | | ||| || ||||||||||||| | |||| | | Sbjct 2895 CTTGGGACCGACTACAGCCCCAGGATGT---GATGAGCCGACATCGAGGTGCCAAACACC 2839 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||| ||||| | | |||| |||||||| | ||| ||||| Sbjct 2838 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTT 2784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854137588128