Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= AAMG01001188.1 Length=621 Score E Sequences producing significant alignments: (Bits) Value seq7971 684 0.0 seq20244 80.6 1e-12 >seq7971 Length=25187 Score = 684 bits (758), Expect = 0.0 Identities = 518/603 (86%), Gaps = 7/603 (1%) Strand=Plus/Plus Query 1 TCGATCGCCTTTGGCACGGGAAGTGGCCTTGCTTTGGCTTTTCGAGGCGTTCGCCGAGAA 60 |||||| ||| ||| || || ||||| |||||| | ||| |||||||| |||||||| Sbjct 3788 TCGATCTGCTT-GGCCCGCGAGGTGGC-TTGCTTGGCCTTG--GAGGCGTTGGCCGAGAA 3843 Query 61 ACGGCTTGACGAAGGATTTGCAGCTCGGTGATCTGCGCCTTCTTTCTTGGCGTTGTCCGA 120 ||||| |||||||| ||||||| || | |||||| || ||||| ||||||||||||||| Sbjct 3844 GCGGCT-GACGAAGG-TTTGCAGTTCAGCGATCTGGGCTTTCTT-CTTGGCGTTGTCCGA 3900 Query 121 CAGCAGTTGCTCGCGGGACTGGGTCGCCACGGTCATGTACTCGTCGTAGTTGCCCGGGAA 180 |||||| |||||||||| |||||| || ||||||||||||||||||||||||| ||||| Sbjct 3901 CAGCAGCTGCTCGCGGGCCTGGGTGGCGGCGGTCATGTACTCGTCGTAGTTGCCGGGGAA 3960 Query 181 CAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCATGTGGGTACACACGCTGTTCAGGAAGTG 240 |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 3961 CAGGCGCAGCTCACCGTAGTCCAGGTCAGCCATGTGGGTGCACACGCTGTTGAGGAAGTG 4020 Query 241 ACGGTCGTGAGAGATGATGATCATCAGGCTGGAACGCTGGGTCAGGATATTTTCCAGCCA 300 |||||||| || ||||| | ||| |||| |||| ||| || | |||||||||| Sbjct 4021 GCGGTCGTGGGAAATGATCACCATGGTGCTGTTACGCGCGGTGAGCACGGTTTCCAGCCA 4080 Query 301 GCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATC 360 |||||||||||||||||||| |||||||||||| |||||||||| ||| || || || || Sbjct 4081 GCGGATGGTGTTGATGTCCAGGTGGTTGGTCGGCTCGTCGAGCAGCAGTACGTCCGGGTC 4140 Query 361 GGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACACTTCGCTCAT 420 || ||||| ||||||||||||| |||||||||||||||||||| | ||||||||||| Sbjct 4141 CGAGAACAGGGCCTGGGCCAGCAGCACACGCAGCTTCCAGCCCGGCGCTACTTCGCTCAT 4200 Query 421 CGGACCGAAGTGCTGCTCCAGCGGAATACCCAGACCCAGCAGCAGCTCACCGGCACGGGA 480 || ||||| ||||||||||||||||| ||||| |||||||||| || || || || || Sbjct 4201 TGGGCCGAAATGCTGCTCCAGCGGAATGCCCAGGCCCAGCAGCAATTCGCCTGCGCGCGA 4260 Query 481 TTCGGCGGTGTAGCCGTCCATCTCGGCGAACTCGGTTTCCAGCTCGGCCACGGCCATGCC 540 |||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| Sbjct 4261 CTCGGCGGTGTAGCCGTCCATTTCGGCGAACTCGGTTTCCAGCTCGGCGACAGCCATGCC 4320 Query 541 GTCTTCTTCGCTCATTTCCGGCAGCGAGTAAATACCATCACGCTCGGCCTTGACCTTCCA 600 |||||||||| |||||| |||||||| || |||| |||||||||||||||||||||||| Sbjct 4321 GTCTTCTTCGGACATTTCAGGCAGCGAATAGATACGATCACGCTCGGCCTTGACCTTCCA 4380 Query 601 CAG 603 || Sbjct 4381 GAG 4383 >seq20244 Length=11013 Score = 80.6 bits (88), Expect = 1e-12 Identities = 74/91 (81%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 292 TTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCAC 351 |||||||||| |||||| || | |||||||||||||||||||||||||||||| | || Sbjct 10012 TTCCAGCCAGAGGATGGCGTCCAGGTCCAAGTGGTTGGTCGGTTCGTCGAGCAATAACAG 10071 Query 352 TTCAGGATCGG-AAAACAGCGCCTGGGCCAG 381 || ||| || | | || ||||||||||| Sbjct 10072 ATC-GGAGGGGCACATCAATGCCTGGGCCAG 10101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1881004044948