Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq487 269 1e-69 >seq487 Length=3340 Score = 269 bits (298), Expect = 1e-69 Identities = 395/547 (72%), Gaps = 25/547 (5%) Strand=Plus/Minus Query 49 TCCCGGCATTCGGAGTTTGGT-TGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATC-C 105 || ||| |||||||||||| || ||| |||||| | | | |||||||| |||| | Sbjct 1283 TCTCGGTATTCGGAGTTTGCAATGGTTT-GGTAAGTCGCGATGACCCCCTAG-CCATAAC 1226 Query 106 AGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAAC 165 ||||||||||| ||| || || ||| || || |||||||| ||||| ||||||| Sbjct 1225 AGTGCTCTACCCCCGAGAGGATACATATGAGGCGCTACCTAAATAGCTTTCGAGGAGAAC 1166 Query 166 CAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTT 225 |||||||| | ||| |||| || |||||| |||| ||||| |||||||| ||| Sbjct 1165 CAGCTATCTCCGGGTTCGATTAGCTTTTCACTCCTAATCACAGCTCATCCCCGTCTTTTG 1106 Query 226 CAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGAT 285 |||| | |||||||||| |||||| | |||| ||||| |||| ||||| | Sbjct 1105 CAACAGACGTGGGTTCGGGCCTCCAGTACCTGTTACGGCACCTTCACCCTGGCCATGACT 1046 Query 286 AGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTC 345 ||||||| | ||||||||| | || ||| || |||||| || |||||| |||| Sbjct 1045 AGATCACCCGGTTTCGGGTCTACTGCCCGCGACT-ATGCGCCCTTATCAGACTCGGTTTC 987 Query 346 GCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCT 405 || || || ||| | || |||||| || || || ||| || |||| | | |||| | Sbjct 986 CCTTCGCCTCCCCTATAC-GGTTAAGCTTGCCAC-GAACAGTAAGTCGCTGACCCATTAT 929 Query 406 TCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTC-AGCTCCGACGGATTGTAGG 464 ||||||| |||| ||||| || ||| |||||| || | ||||| | Sbjct 928 ACAAAAGGTACGCAGTCAC------TCT---------TTCGAGCTCCTACTGCTTGTACG 884 Query 465 CACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCAC 523 |||| ||||||||| |||||||||||||| | | ||||| |||||| |||||||||||| Sbjct 883 CACACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCAC 824 Query 524 GGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGA 583 |||||| || | ||||||||| || ||||||||| ||| || ||||||| ||| Sbjct 823 GGTACTGGTTCACTATCGGTCGGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATG 764 Query 584 TTCACAC 590 |||| || Sbjct 763 TTCAGAC 757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817041760512