Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= AAMG01001228.1 Length=576 Score E Sequences producing significant alignments: (Bits) Value seq29526 365 2e-98 seq3412 156 1e-35 >seq29526 Length=416 Score = 365 bits (404), Expect = 2e-98 Identities = 335/419 (80%), Gaps = 22/419 (5%) Strand=Plus/Plus Query 98 CGCGGCGCAGGGCCATGCACGGCGGCGCAGCATCGGCGAGGTGCT---CAGTCG------ 148 ||| || |||||||||| || || ||||| ||||| ||||| || ||| || Sbjct 1 CGCCGCCGAGGGCCATGCCCGACGTCGCAGTATCGGTGAGGTACTGGCCAGCCGGGTGGT 60 Query 149 ----CCG----TGCATAAATGCAATAACGACCTGCAGGATTCCCCGGTGTACTGGGCAAA 200 ||| ||||||||||||| |||||||||||||||||| | ||||||||||||| Sbjct 61 TTGACCGGCACTGCATAAATGCAACAACGACCTGCAGGATTCCGGGTTGTACTGGGCAAA 120 Query 201 TGTGCACTGGTAGGATCGCAAGAAGGTTCGTCCCCGAACATCTTGATAAAGAACAATAAA 260 | |||||||||| |||| | ||| |||| || ||||||||||||||||| |||||||| Sbjct 121 TTTGCACTGGTACGATCACGAGAGAGTTCACCCGCGAACATCTTGATAAAG-ACAATAAA 179 Query 261 AGCAGGGAGTTAGCGATGACTGCTCAGGTTTCATCCGAGGCAAGCCACACCGACCATCTT 320 ||||||||||||| |||||||||||||||||||||| | ||||||||| |||| | Sbjct 180 AGCAGGGAGTTAGAGATGACTGCTCAGGTTTCATCCCAAGCAAGCCACGCCGAGGTGCAG 239 Query 321 CAAGCCGACATACTCGCCGAAGTCCGCAACCATATCGGCCACCTCACCCTCAACCGCCCC 380 || | || | || || || ||||||||||||||||||||||||||||| || ||| Sbjct 240 CAGGACGCTGTCCTGGCAAGCGTGCGCAACCATATCGGCCACCTCACCCTCAATCGTCCC 299 Query 381 GCCGGCCTGAACGCCATTACCCTGGACATGGTCCG-CAGCCTGAGCCAC-CACCTGCAGG 438 || ||| |||||||||| ||||||||||||||||| ||| | | || | || |||||| Sbjct 300 GCTGGCTTGAACGCCATCACCCTGGACATGGTCCGCCAG--TTAACCGCGCATTTGCAGG 357 Query 439 CCTGGGCCGACGATCCCACGGTGTATGCCGTGGTCCTGCGCGGCGCCGGGGAAAAAGCC 497 |||||||||||||| || ||| ||||||||||| |||||||||||||| || |||||| Sbjct 358 CCTGGGCCGACGATGCCGAGGTCTATGCCGTGGTACTGCGCGGCGCCGGTGAGAAAGCC 416 >seq3412 Length=714 Score = 156 bits (172), Expect = 1e-35 Identities = 169/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 338 CGAAGTCCGCAACCATATCGGCCACCTCACCCTCAACCGCCCCGCCGGCCTGAACGCCAT 397 ||| || |||||||| ||||||||||| |||||||||||||| || |||||||| | Sbjct 385 CGAGGTTCGCAACCAGATCGGCCACCTGCGTCTCAACCGCCCCGCTGGGTTGAACGCCCT 444 Query 398 TACCCTGGACATGGTCCGCAGCCTGAGCCACCACCTGCAGGCCTGGGCCGACGATCCCAC 457 ||| |||||||||| |||||| || || | |||||| | || ||||||| ||||| | Sbjct 445 GACCTTGGACATGGTGCGCAGCTTGCGCAAGCACCTGGACGCGTGGGCCGGTGATCCGAA 504 Query 458 GGTGTATGCCGTGGTCCTGCGCGGCGCCGGGGAAAAAGCCTTCTGCGCGGGCGGCGATAT 517 | ||||| || |||||||||| ||| || | ||||||||| || || || || Sbjct 505 CATCCGCGCCGTCGTACTGCGCGGCGAAGGGCCGAAGGGCTTCTGCGCCGGTGGTGACAT 564 Query 518 CCGTTCCTTGCATGACAGTTTCAAGAGCGGCGACACCCTGCACG 561 ||| || |||||||||| | ||| ||| ||| |||||||| Sbjct 565 CCGCTCGCTGCATGACAGCTACAAAGCCGGTGACGACCTGCACG 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1740265348096