Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= AAMG01001569.1 Length=509 Score E Sequences producing significant alignments: (Bits) Value seq17717 300 5e-79 seq29885 201 3e-49 >seq17717 Length=4727 Score = 300 bits (332), Expect = 5e-79 Identities = 325/425 (76%), Gaps = 12/425 (3%) Strand=Plus/Minus Query 2 GACGGTCGTCCGTCGCCGACCCTGGGCTCGCGTGGCGGCCTGTACCCGGAGACC-GCACT 60 ||||| | || || ||| | |||||| | || || ||| |||||||||| ||| |||| Sbjct 3087 GACGGCAGGCCTTCACCGTCGCTGGGCACCCGCGGTGGCATGTACCCGGAAACCAGCACC 3028 Query 61 GATTTCGGTGACCGGCCAGGATGTGCTGCCCAAGTTGCAGGCCCAGGCTGAAGCTGCTGT 120 || || | |||| | | ||| |||||||| ||||||||||||| || ||||| || Sbjct 3027 -ATCAGTGTCAGCGGCAACCAGGTGGTGCCCAAGCTGCAGGCCCAGGCCGAGGCTGCCGT 2969 Query 121 GCGTTTGTTGGGCTTTACGCCGACCAACTC--GCCAGGCGTACCACAACTGACCGTGACC 178 ||| || ||||||| ||||| |||| | | || | ||| || || ||||||| ||| Sbjct 2968 GCGCCTGCTGGGCTTCACGCCCACCACCGCAGGCAACGCG--CCCCAGTTGACCGTTACC 2911 Query 179 CTGGCCGAGCTTAAATACCAGTCGCCCAAAGACGGCCTGTATGTGACCGAGGCTTCCATC 238 ||||||||||| || |||||||||||||| ||| ||||| |||||||| || |||| Sbjct 2910 CTGGCCGAGCTGAAGTACCAGTCGCCCAAGGACAAGCTGTACGTGACCGAAGCCACCATT 2851 Query 239 GGCGCCACCTTCAAGTCTGACGTCAGTGCCGGCACC---CGCCGTTACAGTGGCCGCTAC 295 ||||| |||||| |||||||| ||| || | ||||| |||| || ||||| Sbjct 2850 GGCGCTACCTTCCGTGCTGACGTC---GCCAACAACGGCCGCCGCTACACCGGTCGCTAT 2794 Query 296 GCCGCCTCGCTCAACCAGCGTTTCGGCATGTCGCCCAACCAGGAAACCAACACCAAGCTG 355 | ||| ||||| | ||||| || |||||| |||| |||||||| ||||||||| || || Sbjct 2793 GGCGCTTCGCTGGATCAGCGCTTTGGCATGGCGCCAAACCAGGACACCAACACCCAGTTG 2734 Query 356 GTCAGCGACGTGCTCAGCGATGCCCTGACCCGCCTGTTCAAGGACCCAAGCATCGGCCAA 415 |||||||| ||| | ||||| || |||||||| |||||||||||||||||||||| || Sbjct 2733 GTCAGCGATGTGTTGAGCGACGCACTGACCCGGTTGTTCAAGGACCCAAGCATCGGTCAG 2674 Query 416 CTGCT 420 |||| Sbjct 2673 GTGCT 2669 >seq29885 Length=1077 Score = 201 bits (222), Expect = 3e-49 Identities = 127/135 (94%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 376 TGCCCTGACCCGCCTGTTCAAGGACCCAAGCATCGGCCAACTGCTCAGCGCGCAATAAGC 435 |||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1077 TGCCTTGCCCCGCCTGTTCAAGGACCCAAGCATCGGTCAACTGCTCAGCGCGCAATAAGC 1018 Query 436 CGCTCACaaaaaaaCCGGGCTCATCGCTGAGCCCGGtttttttATGCCTGTGG-TTTTGT 494 ||||||| ||||||||||||||||||||||||||||||||||| |||| |||| |||||| Sbjct 1017 CGCTCAC-AAAAAACCGGGCTCATCGCTGAGCCCGGTTTTTTTGTGCCCGTGGTTTTTGT 959 Query 495 CATGCCGCCGTATCG 509 ||||| ||||||||| Sbjct 958 CATGCGGCCGTATCG 944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1525931196768