Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq9311 309 7e-82 seq11968 248 2e-63 >seq9311 Length=16340 Score = 309 bits (342), Expect = 7e-82 Identities = 305/394 (77%), Gaps = 0/394 (0%) Strand=Plus/Minus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 ||||||| ||||| ||||||||||| || ||||| ||||| || || ||||| |||| | Sbjct 10641 CGATGGTGAGCAATTCGCCGCCCACTTGTGTCCATGCCAGACCCGTCACCTGGCCGATCT 10582 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 | |||||||||||||||||||| || | ||| ||||||||||| || | ||| || || Sbjct 10581 GGTCCTGCTGCTCGGCCAGGCCATAACGGAACTTGCGCACGCCCAGAAGGTGTTCGAGCT 10522 Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATGTTCCTTGACCGCCTTGC 180 ||| | || ||||| || || | |||| | |||||||||||||| |||| | Sbjct 10521 GCTCGCCGGTCACCTTGACGTTGACCTGCTTTTGCCCTGCATGTTCCTTGACGACCTTAC 10462 Query 181 GGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGC 240 |||||| ||| || ||||| ||||| || ||||||||||| |||||||| |||||||| | Sbjct 10461 GGCAGACCTTGGCAATCTGACGCTCAAGACCACGCACACCCGCTTCGCGCGTGTAGTAAC 10402 Query 241 GGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGG 300 | | ||||||||| || | ||| || | || | ||| | || |||||||| || | Sbjct 10401 GAATGATGTCGCGAATGGCCGAGACATCGATCTCCAGCTCTTCTTTTTTCAGGCCGTTCG 10342 Query 301 CCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGT 360 || | |||||||||| | ||||| |||| |||||||| || || || |||||||||| Sbjct 10341 CCTTGACCTGCTTGGGCACCAGGTATTTGACTGCGATGTTTATTTTTTCATCTTCGGTGT 10282 Query 361 AACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 |||||||||| ||||| | |||||||||||||| Sbjct 10281 AACCCGGCAGACGAATGATCTCCATCCGGTCCAG 10248 >seq11968 Length=1860 Score = 248 bits (274), Expect = 2e-63 Identities = 164/182 (90%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 213 CGCACACCGGCTTCGCGGGTGTAGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAAT 272 || |||||||| ||||||||||||||||| |||||||| ||||||| |||| || ||| Sbjct 1858 CGTACACCGGCCTCGCGGGTGTAGTAGCGCACGATGTCACGGATCGCCTCGACCTCGAAT 1799 Query 273 TCGATCTCGCCCTTCTTCAGGCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATG 332 ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||| Sbjct 1798 TCGATCTCGCCCTTCTTCAGGCCGTTCGCCGAAATCTGCTTGGGCGCCAGGTACTTGACT 1739 Query 333 GCGATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCC 392 ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||| Sbjct 1738 GCGATGTTGATCTTCTCGTCTTCGGTGTAGCCCGGCAGACGAATCACCTCCATCCGATCC 1679 Query 393 AG 394 || Sbjct 1678 AG 1677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158044220608