Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= AAMG01001951.1 Length=416 Score E Sequences producing significant alignments: (Bits) Value seq27934 262 1e-67 seq100 107 5e-21 seq8504 95.1 3e-17 seq19579 84.2 5e-14 >seq27934 Length=6183 Score = 262 bits (290), Expect = 1e-67 Identities = 307/415 (74%), Gaps = 0/415 (0%) Strand=Plus/Plus Query 2 CCATCCCAACGCCATGACCCAGGTGGTGTTTGGCGAAAACGGCGAGCTGCACCGCGACAC 61 ||| || ||||||||||||| |||| ||||| | ||||| | |||||||| || Sbjct 4503 CCACCCGAACGCCATGACCCTTGTGGCAGAAGGCGAGCATGGCGAAATTCACCGCGATAC 4562 Query 62 CTATTACTCGGTGGGTGGCGGTTTCGTGGTGGATGAAGCCCAGGCCCAAAGCGGTGTGGC 121 ||| |||||||| || || || |||||||| |||| ||||||||| || || ||| Sbjct 4563 CTACTACTCGGTCGGCGGTGGCTTCGTGGTCGATGCCGCCCAGGCCGCCAGTGGCGTGCT 4622 Query 122 GGACATGGACCGTACCGAGCTGCCCTATGATTTTTCCAGTGCCGTGGAGCTGTTGCAGCT 181 |||| |||| |||| |||||| || ||||| ||| || | || ||||||| || Sbjct 4623 GGACGCCGACCAGACCGTGCTGCCTTACGATTTCAACAGCGCGGCTGAACTGTTGCGCCT 4682 Query 182 GTGCAAGACCCACAACCTGCGCGTTGCCGAACTGATGCTGGCGAATGAAAAAACCTGGCG 241 ||||||| || ||||| |||| | || ||||| |||| |||||| |||||| Sbjct 4683 GTGCAAGCAAAACGACCTGAGCGTGTCGCAATTGATGATGGCCAATGAACGGGTCTGGCG 4742 Query 242 CAGCGAAGAAGAAATCCGCAGCGGCCTGATGAAACTCTGGCGCGCCATGCAGGATTGCGT 301 |||||| | || || ||| ||||||| | || ||| ||||||||||| ||||| Sbjct 4743 CAGCGAGGCGGAGATTCGCGCCGGCCTGCACACGCTTTGGGATGCCATGCAGGAGTGCGT 4802 Query 302 GGAGCAGGGCCTCAAGCACGAAGGTATCCTGCCCGGCGGCTTGAACGTGCGCCGTCGCGC 361 | | || |||||| ||||||| | || || ||||| ||||||||||||| || || Sbjct 4803 CAACAATGGGCTCAAGTACGAAGGCACGCTTCCGGGCGGGCTGAACGTGCGCCGCCGTGC 4862 Query 362 TGCCAAGTTACACCGCAGCTTGCAGGAGCTGAACAAGCCCAATGTGATCGGCTCG 416 ||||||| | ||||||||| |||||||| | ||||||||| |||||||||||| Sbjct 4863 TGCCAAGCTGCACCGCAGCCTGCAGGAGATCGGCAAGCCCAACGTGATCGGCTCG 4917 >seq100 Length=216 Score = 107 bits (118), Expect = 5e-21 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 250 AAGAAATCCGCAGCGGCCTGATGAAACTCTGGCGCGCCATGCAGGATTGCGTGGAGCAGG 309 |||| ||||||||||||||| || | ||||| | |||| || |||||||| |||| Sbjct 216 AAGATATCCGCAGCGGCCTGCTGCATATCTGGTCGGTGATGCGCGAGTGCGTGGAACAGG 157 Query 310 GCCTCAAGCACGAAGGTATCCTGCCCGGCGGCTTGAACGTGCGCCGTCGCGCTGCCAAGT 369 |||| | ||||| ||||||||||| ||| || | |||| ||||||||| || |||| Sbjct 156 GCCTGCGCGATGAAGGCATCCTGCCCGGTGGCCTGGATGTGCCCCGTCGCGCCGCGAAGT 97 Query 370 TACACCGCAGCTTGCAGGAGCTGAACAAGCCCAATGTGATCGGCTCG 416 | || |||| | || ||| | |||||||| |||||| |||| Sbjct 96 TGCATCGCAACCTGTTGGAAATCGGTAAGCCCAACGTGATCACCTCG 50 >seq8504 Length=2398 Score = 95.1 bits (104), Expect = 3e-17 Identities = 111/146 (76%), Gaps = 7/146 (5%) Strand=Plus/Minus Query 215 GATGCTGGCGAATGAAAAAACCTGGCGCAGCGAAGAAGAAATCCGCAGCGGCCTGATGAA 274 ||||||| | ||||||| |||||||| |||| |||| ||||||||| || |||| Sbjct 200 GATGCTGACCAATGAAAGTGCCTGGCGCCCGGAAGCCGAAACCCGCAGCGGTTTGTTGAA 141 Query 275 ACTCTGGCGCGCCATGCAGGATTGCGTGGA-GCAGGGCCTCAAGC-ACGAAGGTATCCTG 332 |||||| | ||||||||||||||| || || || || || ||||||| ||| || Sbjct 140 GATCTGGCAGGTCATGCAGGATTGCGTCGATGCCGG--CTGTCGCAACGAAGGCATCTTG 83 Query 333 CCCGGCGGCTTGAACGT---GCGCCG 355 ||||| |||||||| || |||||| Sbjct 82 CCCGGAGGCTTGAAGGTCAAGCGCCG 57 >seq19579 Length=5510 Score = 84.2 bits (92), Expect = 5e-14 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 277 TCTGGCGCGCCATGCAGGATTGCGTGGAGCAGGGCCTCAAGCACGAAGGTATCCTGCCCG 336 ||||| ||||||| || ||||| || | || || |||| || | |||| | Sbjct 27 TCTGGGCTGCCATGCGCGAGTGCGTCGACAATGGGCTGCGCAACGAGGGCGTATTGCCAG 86 Query 337 GCGGCTTGAACGTGCGCCGTCGCGCTGCCAAGTTACACCGCAGCTTGCAGGAGCTGAACA 396 |||||||| | || || || || |||||||| |||||||||||||| |||||| || Sbjct 87 GCGGCTTGCAGGTCAAGCGCCGGGCGGCCAAGTTGCACCGCAGCTTGCAAGAGCTGGGCA 146 Query 397 AGCCCAATGTGATCGGCTC 415 |||||||||| ||||| || Sbjct 147 AGCCCAATGTCATCGGTTC 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1228422598656