Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= AAMG01001997.1 Length=304 Score E Sequences producing significant alignments: (Bits) Value seq29736 453 2e-125 seq27072 86.0 1e-14 >seq29736 Length=1966 Score = 453 bits (502), Expect = 2e-125 Identities = 286/304 (94%), Gaps = 4/304 (1%) Strand=Plus/Minus Query 1 CCGCATCGTCAAACGCAGGGAACTTCGCCAGCTTCCATTCGGTTCCCCGAGTTTCttttt 60 ||||||||||||| ||||||||||| ||||||| ||||| |||| ||||||||| ||||| Sbjct 1513 CCGCATCGTCAAATGCAGGGAACTT-GCCAGCT-CCATT-GGTTACCCGAGTTTATTTTT 1457 Query 61 ttttCGCAAGCGGGCCAATCGTTGGCCACGCGACAGGGCATTCAAGCAGTTGAAATTAGA 120 ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1456 TTT-CGCAAGCGGGCCAATCGTTGGCCACGCGACAGGGCATTCAAGCAGATGAAATTAGA 1398 Query 121 AAATGCGCTCTAAACAGCAAGACCGTTGAGCTAGAGCATCAGCCGCACGACCGACTCACT 180 |||||||||||||||||||||| | || ||||||||||||||||||||||||||||||| Sbjct 1397 AAATGCGCTCTAAACAGCAAGATCCCTGTGCTAGAGCATCAGCCGCACGACCGACTCACT 1338 Query 181 CGGATCGCGGGTTTTACCAGCGGCTTTGAGCTCGGCCAGGTAGTCGGCCCACAAAGCGTC 240 ||||||||||||||| |||||||||||||||||| |||||||||||||||| | |||||| Sbjct 1337 CGGATCGCGGGTTTTTCCAGCGGCTTTGAGCTCGTCCAGGTAGTCGGCCCATAGAGCGTC 1278 Query 241 CTGACGTACGGCCAACTGATAGAGGTAGTCCCAGGTGAACAGTCCGCTGTCATGACCGTC 300 |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1277 CTGACGTACGGCCAGCTGATAGAGATAGTCCCAGGTGAACAGTCCGCTGTCATGACCGTC 1218 Query 301 GTCG 304 |||| Sbjct 1217 GTCG 1214 >seq27072 Length=12694 Score = 86.0 bits (94), Expect = 1e-14 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 218 AGGTAGTCGGCCCACAAAGCGTCCTGACGTACGGCCAACTGATAGAGGTAGTCCCAGGTG 277 ||||| ||||||||||| |||||||||| | |||||| | ||||| ||||||||| Sbjct 2283 AGGTATTCGGCCCACAAGACGTCCTGACGCAGACACAACTGTTCCAGGTATTCCCAGGTG 2342 Query 278 AACAGTCCGCTGTCATGACCGTCGTCG 304 ||||| || |||||||| || |||||| Sbjct 2343 AACAGACCACTGTCATGGCCATCGTCG 2369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 870132674048