Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= AAMG01002049.1 Length=571 Score E Sequences producing significant alignments: (Bits) Value seq29624 403 6e-110 seq11829 120 1e-24 >seq29624 Length=14981 Score = 403 bits (446), Expect = 6e-110 Identities = 431/559 (77%), Gaps = 9/559 (2%) Strand=Plus/Plus Query 16 TTCAGGTCGTTCCGGGTCAAGGTCGGCCAGGGCTTCCTGATGATCTTCACCGGTCTAGTT 75 ||| |||| ||||| ||| ||| | | |||| | |||||||| | | || | || Sbjct 1729 TTCTGGTCCTTCCGCATCATGGTGGCGCTGGGCATGTTGATGATCGCCGCTGGCGT-GTG 1787 Query 76 CAGCCAGTGGCTAGCGCCGGGGCGACAAGATGTACACGTCCAAGCCGTTCCTGTACCTGG 135 |||| || | |||| |||| |||| ||||||| || |||||||||| | | | Sbjct 1788 GAGCCT-TGTATTGCGCAAAGGCGGCAAGCTGTACACCTCGCGGCCGTTCCTGCATTTCG 1846 Query 136 CGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGCTGGTTCACCACGGAAA 195 | |||||||| || || || ||| | || || |||||||||||||||||||| |||| Sbjct 1847 TGACCTGGATGGGGCCTTCAGGATTGCTGGCAATCCTCGCCGGCTGGTTCACCACCGAAA 1906 Query 196 TCGGCCGTCAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGCGGATG-CGTCCTCCGGG 254 ||||||| ||||| |||||||||||||| |||||||||||||| || | |||| ||| Sbjct 1907 TCGGCCGCCAGCCCTGGGTGGTCTACGGGCTGATGCGCACGGCCGACGGCGTC-TCCAAC 1965 Query 255 CATAGCCTGGTGCAGATGACGATTACGCTGGTGTTGTTCGTGGTGGTGTACTTCGCGCTG 314 || ||| | || || | | || |||||| ||||||||||||||||||||| ||| Sbjct 1966 CACAGCTATGCCCAACTGGGGTTCACCCTGGTGGCGTTCGTGGTGGTGTACTTCGCCCTG 2025 Query 315 TTCGGTGCCGGTCTGGGCTACATGATGCGCCTGGTGCGCAAAGGTCCGCAGACCCACGAA 374 ||||| | || | | |||||||||||||||||||||||| || ||||| ||| |||| Sbjct 2026 TTCGGCACAGGGTTCGCCTACATGATGCGCCTGGTGCGCAAGGGCCCGCATACCGGCGAA 2085 Query 375 GGCGATGAGCCGACCCACGGTGGTCCTGGCCAGAAACGCACGCCAGCCCGTCCGTTGTCT 434 |||||| ||| | | || |||||||||| ||||||||||| || || || ||||| Sbjct 2086 GGCGATCAGCAGCGTCCGGGCGGTCCTGGCCGCAAACGCACGCCGGCGCGGCCATTGTCC 2145 Query 435 GCCGCCGATGATGGCAGCGATGACGACCACACCCACATCCAGCACAAGGGGCATTGAG-- 492 |||||||| || |||||||||| | ||||| || | || | ||||||| | |||| Sbjct 2146 GCCGCCGACGAAGGCAGCGATG-CCACCAC-TGCAGA-CCTGAGCAAGGGGAACTGAGCC 2202 Query 493 ATGGGTATTGATCTTCCGCTGATCCGGGCCGTGATCATCATCTTCGGCATCATGATGTAC 552 |||||||| |||||||| |||||| |||||| ||||||||||||||| ||||||||||| Sbjct 2203 ATGGGTATCGATCTTCCACTGATCTGGGCCGGCATCATCATCTTCGGCGTCATGATGTAC 2262 Query 553 GTGGTCATGGACGGCTTCG 571 ||||| ||||||||||||| Sbjct 2263 GTGGTGATGGACGGCTTCG 2281 >seq11829 Length=1437 Score = 120 bits (132), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 4 TCGACCGTCGAGTTCAGGTCGTTCCGGGTCAAGGTCGGCCAGGGCTTCCTGATGATCTTC 63 |||||||| | |||| ||||||||||||||| |||||||| ||| ||||||||||||||| Sbjct 93 TCGACCGTTGTGTTCTGGTCGTTCCGGGTCATGGTCGGCCTGGGGTTCCTGATGATCTTC 34 Query 64 ACCGGTCTAGTTCAGCCAGTGGCTAGCGCCGGGGC 98 |||||| | |||||||| |||||| |||||||||| Sbjct 33 ACCGGT-TTGTTCAGCCTGTGGCT-GCGCCGGGGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1724270262176