Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= AAMG01002172.1 Length=233 Score E Sequences producing significant alignments: (Bits) Value seq20327 345 5e-93 seq24925 129 8e-28 seq26219 75.2 1e-11 >seq20327 Length=532 Score = 345 bits (382), Expect = 5e-93 Identities = 217/233 (93%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 1 TCGAGTGGTCAAGCCGACCTTCGTGCGCCATGGCAAAACCTTGATCTAATCTATTTCCGG 60 ||||||||||||||||||||||||||| |||||||||||| |||||||| | ||| |||| Sbjct 57 TCGAGTGGTCAAGCCGACCTTCGTGCGTCATGGCAAAACCCTGATCTAACCAATT-CCGG 115 Query 61 CAGGCCAATGGCCGCTGACATTACTTCTTGAGGACACAGACTATGAGCGATATCCCTGCC 120 |||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||| Sbjct 116 CAGGCCAAAGGCCGCTGACATTTCATCTTGAGGACACAGACTATGAGCAATATCCCTGCC 175 Query 121 GACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAAGCTGACGGCACCGTGACC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 176 GACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAAGCTGACGGCACCGTGACC 235 Query 181 GTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTGATTGTCGA 233 || || |||||||||||||| |||||||| ||||| ||||||||| |||| || Sbjct 236 GTCGGGATCTCCGACCATGCACAGGAAGCTTTGGGTGATGTGGTGTTTGTTGA 288 >seq24925 Length=1862 Score = 129 bits (142), Expect = 8e-28 Identities = 111/136 (82%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 98 AGACTATGAGCGATATCCCTGCCGACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTC 157 |||| |||||| ||||||| ||||| || |||||||||||||| || ||||||||||| | Sbjct 30 AGAC-ATGAGCAATATCCCCGCCGAACTTCGTTTTGCCGAAAGCCATGAATGGGCCCGCC 88 Query 158 TGGAAGCTGACGGCACCGTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGG 217 ||||| | ||||| ||||| || || || ||| |||||||| ||| ||||| |||| | Sbjct 89 TGGAAACCGACGGTACCGTCACGGTAGGCATCAGTGACCATGCGCAGCAAGCGCTGGGTG 148 Query 218 ATGTGGTGATTGTCGA 233 | |||||| | ||||| Sbjct 149 ACGTGGTGTTCGTCGA 164 >seq26219 Length=11245 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/101 (76%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 125 TGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAAGCTGACGGCACCGTGACCGTGG 184 ||||||| |||| ||||||||| ||| | |||||||| |||| ||| ||||| | Sbjct 7920 TGCGTTTCACCGACGACCACGAATGGCTGCGTGTAGAAGCTGATGGCAGCGTCACCGTAG 7861 Query 185 GTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTG 225 ||||| | | | | |||||| | || |||||||||||||| Sbjct 7860 GTATCACTGCCTACGCCCAGCATGCACTGGGGGATGTGGTG 7820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 646207675194