Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq29572 194 3e-47
seq29577 181 2e-43
seq21249 122 2e-25
seq167 77.0 6e-12
>seq29572
Length=8466069
Score = 194 bits (214), Expect = 3e-47
Identities = 200/258 (78%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 5821674 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 5821731
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||||||||||||||| | || || || | |
Sbjct 5821732 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 5821791
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||||| ||| |||||| || | || | | |||| ||||||| | | ||||
Sbjct 5821792 CCTACGCCGGCAGGCGCGGGTAACCTGTTGAATCCCATTCGTAATGGGGATCGGGGATTG 5821851
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | |||||||||| || |||||| ||| ||||| | | |||||||||
Sbjct 5821852 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAATCTTGCGTTGATT 5821911
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 5821912 AAGTCCCTGCCCTTTGTA 5821929
>seq29577
Length=937630
Score = 181 bits (200), Expect = 2e-43
Identities = 198/258 (77%), Gaps = 4/258 (2%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 137732 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 137789
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||||||||||||||| | || || || | |
Sbjct 137790 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 137849
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|| || || ||| |||||| | | || | | ||||| |||| || | | ||||
Sbjct 137850 ACTACGCTGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGG-ATCGGGGATTG 137908
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | |||||||||| || |||||| ||| ||||| ||| |||||||||
Sbjct 137909 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 137968
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 137969 AAGTCCCTGCCCTTTGTA 137986
>seq21249
Length=1240507
Score = 122 bits (134), Expect = 2e-25
Identities = 156/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173
||||||||||| ||||||||||||||| ||| | |||| ||||||||||||||||||| |
Sbjct 37457 GCAATAACAGGGCTGTGATGCCCTTAGGTGTCCGGGGCTGCACGCGCGCTACACTGACTG 37516
Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233
|| || || | | ||| || || ||| ||||| | | || | | | |||
Sbjct 37517 GCTCAGCGTGTGCCTACCCTACGCTGGCAGGAGCAGGTAACCCACTGAATCCCATTTGTG 37576
Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293
||||||| | | | ||| |||||| | | | | ||||||| || |||||| | | |||
Sbjct 37577 ATGGGGATGGGGGACTGCCATTATTCCCCATGAGTGAGGAATTCCCAGTAAGTGTGGGTC 37636
Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| ||| || |||| ||||||||||||||||
Sbjct 37637 AGAAGCTTGC----ATTAAGTCCCTGCCCTTTGTA 37667
>seq167
Length=1357166
Score = 77.0 bits (84), Expect = 6e-12
Identities = 80/101 (79%), Gaps = 3/101 (3%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 69652 CTTCTTAGAGGGACAAGTGGCCTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 69595
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171
|| |||||||||| | ||| ||||| ||||||||||||
Sbjct 69594 ATTACCTTAGATGTCCATGGCTACACGCACGCTACACTGAC 69554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946909086464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |