Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq29572 194 3e-47 seq29577 181 2e-43 seq21249 122 2e-25 seq167 77.0 6e-12 >seq29572 Length=8466069 Score = 194 bits (214), Expect = 3e-47 Identities = 200/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 5821674 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 5821731 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 5821732 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 5821791 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| || | || | | |||| ||||||| | | |||| Sbjct 5821792 CCTACGCCGGCAGGCGCGGGTAACCTGTTGAATCCCATTCGTAATGGGGATCGGGGATTG 5821851 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| | | ||||||||| Sbjct 5821852 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAATCTTGCGTTGATT 5821911 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 5821912 AAGTCCCTGCCCTTTGTA 5821929 >seq29577 Length=937630 Score = 181 bits (200), Expect = 2e-43 Identities = 198/258 (77%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 137732 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 137789 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 137790 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 137849 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || || || ||| |||||| | | || | | ||||| |||| || | | |||| Sbjct 137850 ACTACGCTGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGG-ATCGGGGATTG 137908 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 137909 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 137968 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 137969 AAGTCCCTGCCCTTTGTA 137986 >seq21249 Length=1240507 Score = 122 bits (134), Expect = 2e-25 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||| ||||||||||||||| ||| | |||| ||||||||||||||||||| | Sbjct 37457 GCAATAACAGGGCTGTGATGCCCTTAGGTGTCCGGGGCTGCACGCGCGCTACACTGACTG 37516 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 || || || | | ||| || || ||| ||||| | | || | | | ||| Sbjct 37517 GCTCAGCGTGTGCCTACCCTACGCTGGCAGGAGCAGGTAACCCACTGAATCCCATTTGTG 37576 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 ||||||| | | | ||| |||||| | | | | ||||||| || |||||| | | ||| Sbjct 37577 ATGGGGATGGGGGACTGCCATTATTCCCCATGAGTGAGGAATTCCCAGTAAGTGTGGGTC 37636 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||| || |||| |||||||||||||||| Sbjct 37637 AGAAGCTTGC----ATTAAGTCCCTGCCCTTTGTA 37667 >seq167 Length=1357166 Score = 77.0 bits (84), Expect = 6e-12 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 69652 CTTCTTAGAGGGACAAGTGGCCTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 69595 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 || |||||||||| | ||| ||||| |||||||||||| Sbjct 69594 ATTACCTTAGATGTCCATGGCTACACGCACGCTACACTGAC 69554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946909086464