Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq15337 473 4e-131 seq4669 340 6e-91 seq21786 295 2e-77 seq30058 174 5e-41 seq15197 122 3e-25 seq3843 122 3e-25 seq17107 107 6e-21 seq7882 102 3e-19 seq23759 86.0 2e-14 >seq15337 Length=5198 Score = 473 bits (524), Expect = 4e-131 Identities = 283/297 (95%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 941 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 1000 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1001 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 1060 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1061 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 1120 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1121 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCA 1180 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1181 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 1237 Score = 118 bits (130), Expect = 3e-24 Identities = 103/128 (80%), Gaps = 5/128 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 643 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 702 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| |||||| | Sbjct 703 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC-----CCCGGAGC 757 Query 127 GGCCCGCG 134 || |||| Sbjct 758 GGGTCGCG 765 >seq4669 Length=3610394 Score = 340 bits (376), Expect = 6e-91 Identities = 255/297 (86%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||||| ||||| || ||||| | | | ||||||||| |||||| | Sbjct 50460 CTCCCACTTATTCTACATGTCTCAT-TCTCTTCACCATGCCAGACTAGAGTTAAGCTCTA 50402 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||| |||||||||| || |||||||| ||||||| ||||||||||||| | |||| || | Sbjct 50401 CAGAGTCTTCTTTCTCCTCTGATTCCACCAAGCCTGTTCCCTTGGCTGGGTTTTC-CTGG 50343 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||| ||| ||||||||||||||||||| || ||||||||||| | | ||||||||||||| Sbjct 50342 ATAATAGGTAGGGACAGTGGGAATCTCATTCATCCATTCATGTGTGCCACTAATTAGATG 50283 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | |||| |||||||||||| |||||||||| |||||||||| || ||||| | |||| Sbjct 50282 AGGAGGTATTTGGCTACCTGAAGAGAGTCACAGTTACTCCCACCATTTACTCAAGCTTCA 50223 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||| |||||||||||||| | ||||||| Sbjct 50222 TTGAATTTCTTCACTTTGACATTCAGAGCACTAGGCAGAAATCACATCGTGTCAACA 50166 Score = 77.0 bits (84), Expect = 1e-11 Identities = 81/107 (76%), Gaps = 5/107 (5%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| ||| || |||||||| |||| ||| |||||||| | |||| | | || Sbjct 50766 CTTGTGCTCCACAAGAAATTTCTGTCCTCCCTGAACTCCCCTTAGAAAACCTACCATTTG 50707 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| ||| || |||||| ||||||||||||||| || |||| Sbjct 50706 -----ACAGTTGTACCACCCCAGTCAAACTCCCCACCTGGCACTGTC 50665 >seq21786 Length=8727163 Score = 295 bits (326), Expect = 2e-77 Identities = 244/297 (82%), Gaps = 3/297 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||| |||| |||||| | | ||||||||| |||||||| Sbjct 5438873 CTCCCACTTAT---ACACCTCTTGAGTCTTTTCACTGTGCCAGACTAGAGTGAAGCTCAA 5438817 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||| || ||||||| |||||| ||||| || || ||||| ||||||||| ||| | Sbjct 5438816 TGGGGACTCATTTCCCCAGTGATTCTGCCAAACCTCTTTCCTTGACTGTGGTTTTGCTGG 5438757 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||||| ||||||||||||| || |||||||||||| ||| ||||||||||| Sbjct 5438756 ATAGTAGGTAGGGGCAGTGGGAATCTCATTCATCCATTCATGCATGTCCCTAATTAGATG 5438697 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 || | |||||||||||| ||||||||||| |||||||| || || |||||| | |||| Sbjct 5438696 ACAAAGCATTTGGCTACTTTAAGAGAGTCTTAGTTACTTCCACCATTTACCAGAGCTTCA 5438637 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||| || ||||||||||||||||| | |||| || |||||||||||||| | |||| Sbjct 5438636 TTGATTTCCTTCACTTTGACATTCACAACACTAGGTAGAAATCACATTGCATTAACA 5438580 >seq30058 Length=441181 Score = 174 bits (192), Expect = 5e-41 Identities = 186/242 (77%), Gaps = 9/242 (4%) Strand=Plus/Plus Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCC-GCCAAGCCCGTTCCCTTG 340 || ||||| | ||||||| | || ||| | |||| ||||| || | |||||| Sbjct 220499 TACAGTCAGGTTCAACAG------CCTTGCCCACAGATTTTTGCCAAACCA-TCCCCTTG 220551 Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 ||||| ||||| ||||| ||| || || ||| ||||| || || |||||||||||| Sbjct 220552 GCTGTAGTTTCATCAGATAATAGGTAAAGAGAGTAGGAATATCATTCATCCATTCATGCA 220611 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC-GC 459 || ||||||||||| ||||||| ||||||||||||||||||||||||||| ||| | Sbjct 220612 TATCCCTAATTAGATGGTGAGGCATATGGCTACCTTAAGAGAGTCATAGTTACACCCATC 220671 Query 460 CGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATC 519 |||||| | || | ||||||||| || ||||||||||| ||| ||||||| ||||| Sbjct 220672 AATTTACCTGAGCCTCAGTGAATTTCTCCATTTTGACATTCAAAGCCCTGGGCAAAAATC 220731 Query 520 AC 521 || Sbjct 220732 AC 220733 >seq15197 Length=4482504 Score = 122 bits (134), Expect = 3e-25 Identities = 178/249 (71%), Gaps = 17/249 (7%) Strand=Plus/Minus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCC-TTGGC 342 |||||| ||| |||| |||| || || | |||||| | |||| | | ||| || || Sbjct 265224 GAGTCATGCTTAACATGGTCCTCCTTGTCAGCTGATCCTCTCAAGTCATTGCCCCTTAGC 265165 Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 402 ||| |||| |||| | |||| |||||| | | | |||| | | Sbjct 265164 TGTTGTTTGACTAGGTT------------AGTGAGAATCTTGGTCGTTAATTCGTACT-- 265119 Query 403 TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGT 462 || |||||||||||| |||||| || ||||||||||||| ||||||||||| | || || Sbjct 265118 TCTCTAATTAGATGATAAGGCATCTGACTACCTTAAGAGACTCATAGTTACT-CTGCTGT 265060 Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 ||| || ||| ||||||||||| ||| ||||||| | | ||||||||||||||||| Sbjct 265059 TTATTTGC-CTTCATTGAATTTCTTTACTCTGACATTGAATGTACTGGGCAGAAATCACA 265001 Query 523 TTGCGTCAA 531 | | |||| Sbjct 265000 TCACATCAA 264992 >seq3843 Length=452546 Score = 122 bits (134), Expect = 3e-25 Identities = 120/152 (79%), Gaps = 11/152 (7%) Strand=Plus/Minus Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||| || |||||||| ||||||| || ||||||| ||| |||| | |||| |||| Sbjct 378528 TCTTTGCCTGCTGATTCTGCCAAGCTAATTGCCTTGGCAGTG-TTTCCATGGATACTAGA 378470 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 ||||||||||||| | || |||||| || |||||| |||||||| |||||| Sbjct 378469 TAGGGACAGTGGGGGTT--GT------ATTCATAGGCATCACTATTTAGATGATGAGGCA 378418 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 |||||||| |||| ||||||||||||||||| Sbjct 378417 TTTGGCTATCTTA--AGAGTCATAGTTACTCC 378388 >seq17107 Length=2850787 Score = 107 bits (118), Expect = 6e-21 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| ||| | |||||||| |||||||||| Sbjct 671010 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCCGAGCTCGCCTTAGGAGACCTGCGTTACT 670951 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 670950 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC 670904 >seq7882 Length=1962508 Score = 102 bits (112), Expect = 3e-19 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 ||||| |||||| |||||||||||| || ||||||| | |||| ||||||||||||||| Sbjct 1832230 ACCTTCAGAGAGGCATAGTTACTCCTGCTGTTTACCTGTGCTTCCTTGAATTTCTTCACT 1832171 Query 492 TTGACATTCAGAGCAC 507 |||||||||||||||| Sbjct 1832170 TTGACATTCAGAGCAC 1832155 >seq23759 Length=4713614 Score = 86.0 bits (94), Expect = 2e-14 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 308 TTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367 |||| | ||||||| ||||||| |||||||||||| ||||| | ||| ||||| ||| Sbjct 799608 TTCCTTGATGATTCCAGCAAGCCCAGTCCCTTGGCTGTAGTTTCTCCAGAGAGTAGGTAG 799549 Query 368 GGACAGTGGGAATCTCGTTAATCCATT 394 ||| ||||| |||||| || ||||||| Sbjct 799548 GGAGAGTGGAAATCTCATTCATCCATT 799522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634697781024