Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq23530 114 1e-20 seq20974 95.1 1e-14 seq15277 82.4 6e-11 >seq23530 Length=2024980 Score = 114 bits (126), Expect = 1e-20 Identities = 202/290 (70%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 61084 GATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGAT 61143 ||| |||||| |||| | || ||||| |||||||||||||| | |||||||| || Sbjct 955011 GATGTTTGGCAGGTGTATAGGAAAGCGGAGGCTTCCTTCTGGACAGCTGAGGAGGTGGAC 954952 Query 61144 TTGTCCAAAGACATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTA 61201 | ||||| ||||| | ||||||| | | | | | || || | |||||| | Sbjct 954951 CTTTCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTGAGGAGAG--ATATTTCACTT 954894 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 || ||| |||| |||| ||| || || || || || ||||| || || |||| | Sbjct 954893 CACGTGTTCTGGCTTTCTCTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGC 954834 Query 61262 GT-TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 | || || || || || || | |||| || |||| ||||| |||||||| |||||| Sbjct 954833 GGCTTAGC-CAAGAAGTTCAGATTACGGAAGCCCGTTACTTCTATGGCTTCCAAATTGCC 954775 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 ||||| || | || || || ||||||||| | |||| || || ||||| Sbjct 954774 ATGGAAAACATACATTCTGAAATGTACAGTCTCCTCACTGACACTTACAT 954725 >seq20974 Length=1049469 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| || ||| Sbjct 254538 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAAAAT 254479 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 254478 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 254432 >seq15277 Length=4737824 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 |||| || ||||||||||| |||||||| |||||||||||||| | || || || |||| Sbjct 3369467 CGGAAGCCCGTTGTTTCTATGGCTTCCAAATTGCCATGGAGAACATACATTCTGAAATGT 3369408 Query 61346 ACAGTGTTCTCATCGATACGTACAT 61370 | ||| | ||||| || || ||||| Sbjct 3369407 ATAGTCTCCTCATTGACACTTACAT 3369383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397419184458320