Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq14071 250 9e-62 seq29700 89.7 2e-13 >seq14071 Length=4236 Score = 250 bits (276), Expect = 9e-62 Identities = 902/1388 (65%), Gaps = 36/1388 (3%) Strand=Plus/Plus Query 28627 CTTATCCCCAAGAAAAACTCGAAGTCCACGCTGGCCGCAGGGATCATGATGACTGCACTG 28686 || ||| |||||| ||| ||||| || | ||||| || |||||| | || |||||| Sbjct 259 CTGATCAGCAAGAAGAACGGCAAGTCAACCATCGCCGCCGGCATCATGCTCACCGCACTG 318 Query 28687 TTACTGAACTGGCGGCAGGCGGCGGGCTACACGATTCTGGCCCCGACAGTGGAGGTGGCA 28746 | || ||||||||| | ||| | | || || |||| ||||| |||| | || Sbjct 319 ATCCTCAACTGGCGGGCGTCGGGTGAGTTCATCATCTTGGCGCCGACCAAGGAGATCGCG 378 Query 28747 GCCCACGCCTTCAACCCTGCCAGGGATATGGTACGACGGGACGATGATCTGGATGACCTC 28806 | || ||| | ||| | |||| ||||| | ||||| || || | | ||| Sbjct 379 GATAACTCCTACCTCCCGATCCGGGACATGGTGGGTGCTGACGAAGAGCTCAAGG-CCTT 437 Query 28807 TGTCA-GGTGCAGACACATATCCGGACCATCACCCACCGGGTGACAGACACCACCCTGAA 28865 ||| ||||||| || | || ||| | || ||||| ||| || ||||||| || Sbjct 438 GCTCAAGGTGCAGGATCACCTGCGCACCGTGACGCACCGTCAGACTAACGCCACCCTCAA 497 Query 28866 GGTGGTGGCAGCCGATCCGAATACGGTGTCCGGTATCAAGTCCGTGGGTACGCTGATTGA 28925 |||||| || || || | |||||||| || | || || | || | | |||| Sbjct 498 GGTGGTTGCGGCGGACAGCGAGACGGTGTCGGGCAAGAAAGCCATCGGCGTGTTCGTTGA 557 Query 28926 TGAGCTGTGGCTGTTTGGCAAGCAGTACAAGGCGGAGGACATGTTACGTGAAGCCATCGG 28985 ||||||||| |||| ||||||| | ||| || |||| |||| | || || |||| || Sbjct 558 CGAGCTGTGGGTGTTCGGCAAGCGGGCCAACGCCGAGGCCATGCTGCGCGAGGCCACTGG 617 Query 28986 TGGCCTTGCCTCCCGCCCGGAAGGGTTTGTGGTGTATACGACCACCCAGTCGAATGAACC 29045 |||||| ||||| || || || || || | | | | ||||||||||| ||| || Sbjct 618 TGGCCTGGCCTCTCGGCCAGAGGGATTCATCATCTGGGCCACCACCCAGTCCGATGCGCC 677 Query 29046 TCCCGCCGGGGTGTTCAGACAGAAACTGCAGTACGCCCGGGATGTGCGCGACGGCAAAAT 29105 || ||||| |||||| | ||||| ||| ||||||||| | |||||||||||| | || Sbjct 678 GCCGGCCGGCGTGTTCCGGCAGAAGCTGATGTACGCCCGCAAGGTGCGCGACGGCGAGAT 737 Query 29106 TCATGATCCGCACTTTCTGCCGGTGATCTTTGAACACCCTCCTGAAATGGTGGAAAGCGG 29165 ||| | || |||||||| | | |||| || | ||| | || ||| Sbjct 738 CGTCGATAAGTCGTTCTTGCCGGTGCTGTATGAATTTCCCAAGGCGATGCTAGACGCCGG 797 Query 29166 GGCTCACCTG--CTGATGGAAAACCTCGCCATGGTCAATCCGAATCTCGGCTATTCAGTG 29223 | |||| | || | || | | ||| ||| |||||| | || || || Sbjct 798 CGAACACCGGGACTTCTCTAACGCGT--ACATCACCAACCCGAATTTGGGGCTGTCGGTT 855 Query 29224 GATGAGGCCTTTCTGTACCGGGAGTATCGAAAAGCACGGGAAGCCGGTGAAGAGACATTC 29283 || || |||| | | || | ||| | || | | | |||||||||| | ||| Sbjct 856 GACGAACCCTTCATCGAGCGTGGGTACGCCCAGGCGCAGCTGGACGGTGAAGAGTCGTTC 915 Query 29284 CGGGGCTTCATGTCAAAACACGCCAATGTGGAAATTGGTCTTGCCCTGCGCTCTGACCGC 29343 || ||||| || | || ||| ||| || || || || || || | | || || ||| Sbjct 916 CGCGGCTTTCTGGCCAAGCACCTCAACGTCGAGATCGGCCTGGCGTTACTGTCGGATCGC 975 Query 29344 TGGGCGGGGGCGGATTTCTGGGAAGAGCAG------GGCCGTTGTATCAGCCTGGACGAT 29397 ||||| || |||||||||||||| | |||| | | || || ||||| || Sbjct 976 TGGGCAGGCGCGGATTTCTGGGAGGCGCAGACCTCCGAGCTGTGCCACACGCTGGAGGA- 1034 Query 29398 ATCCTGCT-GCGTGCT--GATGTG-GTGACAGTGGGGATTGACGGCGGAGGGCTGGATGA 29453 |||| | | | ||| || ||| ||| | | || | || ||||| ||||||||||| Sbjct 1035 --CCTGATCGAGCGCTGCGAGGTGATTGATA-TCGGCGTCGATGGCGGGGGGCTGGATGA 1091 Query 29454 TCTGCTGGGGATGTATGTGATTGGGCGTGA-CAGGGAAACCCGCGAATGGCTGGGCTGGG 29512 |||| || | | | || || || ||||| | | ||| |||||| |||| Sbjct 1092 CTTGCTTGGCTTTGCAGCACTCGGTCGAGAGCAGGGCACACGGCG-TTGGCTGACCTGGA 1150 Query 29513 GCCATGCCTGGGCGCATGAAACCGCGGTGGTCCGACGGAAGAGC-GAGGCGTCCCGGTTT 29571 |||||||||||| || | | | ||| || || || ||| || ||| | || | Sbjct 1151 CCCATGCCTGGGCCCACCCATCAGTACTGGAGCGGCGTAA-AGCAGAAGCGCCGCGCATC 1209 Query 29572 CAGGATCTTGTTGCCTG-TGGAGATATGACCATTGTCCGGCGTGTCGGGGATGACACGGC 29630 | || ||| | | ||| | ||||| | || || |||| || |||| | Sbjct 1210 CGCGA-CTTCGCGAAGGATGGGCACCTGACCCTGGTTGAACGCATCGGCGACGACATTGA 1268 Query 29631 GGAAGTGGCGGAATATGTGCGTCGCA--TTCATGAGGCTGAGTTACTGGACCATATCGGT 29688 || ||||| || || | | |||| || | |||| | | |||||| | |||| Sbjct 1269 GGCGGTGGCACAA-CTG-GTGGCGCAGGTTGAGCAGGCCGGCCTGCTGGACAAGGTCGGG 1326 Query 29689 ATTGACCCGTCAGGGGTGGGGCAGATTCTGGATTCACTGGCGGAAGCC---GGGATCCCC 29745 | |||||| | || || ||| ||| || || | || ||||||| || || || Sbjct 1327 CTGGACCCGGCCGGCGTCGGGGCGATCCTCGACGCGCT---GGAAGCCATGGGTATTCCG 1383 Query 29746 GACGGAATTGTGGTGGGGATAAGCCAGGGCTGGAAACTGGGCGGGGCCATTAAAACCACC 29805 || | | | || || || |||||| |||||||| ||||| ||||| || Sbjct 1384 CGCGAGAAAATCGACGGCATCTCACAAGGCTGGCGCCTGGGCGGAGCCATCAAAACTGCC 1443 Query 29806 GAGCGCAAACTGGCTGAAGGGGTGCTGGTGCATGGTGACCAGCCCCTGATGGCCTGGTGT 29865 |||||||||||||| || || |||| | || || | |||||| ||||||||||||| Sbjct 1444 GAGCGCAAACTGGCCGAGGGCACGCTGCTACACGGGGGCCAGCCGATGATGGCCTGGTGC 1503 Query 29866 GTCGGCAATGCCCGGGTGGAGCCTAAAGGTAACGCCATTCTTATCACCAAACAGGCCAGT 29925 ||| || ||| || ||||| || ||| | || || || || ||||||||||| Sbjct 1504 TGCGGTAACGCCAAAGTCGAGCCCCGTGGCAACTCGATCCTCATTACTAAACAGGCCAGC 1563 Query 29926 GGACGGGGAAAAATTGACCCGCTGATGGCGCTGTTCAATGCGGTCTCCCTGATGTCCCTT 29985 || || || || ||||||||||||||||| ||||| || || | |||||| |||| Sbjct 1564 GGCTCGGCCAAGATCGACCCGCTGATGGCGCTATTCAACGCTGTGACGCTGATGGCCCTC 1623 Query 29986 AACCCGGA 29993 || || || Sbjct 1624 AATCCAGA 1631 >seq29700 Length=774 Score = 89.7 bits (98), Expect = 2e-13 Identities = 134/189 (71%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 29769 CCAGGGCTGGAAACTGGGCGGGGCCATTAAAACCACCGAGCGCAAACTGGCTGAAGGGGT 29828 |||||||||| ||| ||| || || |||||||| |||||||| | || | || | Sbjct 409 CCAGGGCTGGCGACTCAACGGCGCAATCAAAACCACAGAGCGCAAGGTTGCGGGCGGCGA 468 Query 29829 GCTGGTGCATGGTGACCAGCCCCTGATGGCCTGGTGTGTCGGCAATGCCCG---GGTGGA 29885 | | ||||| |||| | || || ||||||||||| |||||||| ||| | || | Sbjct 469 GTTTGTGCACGGTGGCACGCGGCTCATGGCCTGGTGCGTCGGCAACGCCAGAACTGTTGC 528 Query 29886 GCCTAAAGGTAACGCCATTCTTATCACCAAACAGGCCAGTGGACGGGGAAAAATTGACCC 29945 | | || |||||||| |||| |||||||| || || || ||| |||||||| Sbjct 529 GGTT---GGCAACGCCATAGCGATCAACAAACAGGTGAGCGGGTCGGCAAAGATTGACCC 585 Query 29946 GCTGATGGC 29954 ||| ||||| Sbjct 586 GCTCATGGC 594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175481575557348