Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_011356.1
Length=54896
Score E
Sequences producing significant alignments: (Bits) Value
seq14071 250 9e-62
seq29700 89.7 2e-13
>seq14071
Length=4236
Score = 250 bits (276), Expect = 9e-62
Identities = 902/1388 (65%), Gaps = 36/1388 (3%)
Strand=Plus/Plus
Query 28627 CTTATCCCCAAGAAAAACTCGAAGTCCACGCTGGCCGCAGGGATCATGATGACTGCACTG 28686
|| ||| |||||| ||| ||||| || | ||||| || |||||| | || ||||||
Sbjct 259 CTGATCAGCAAGAAGAACGGCAAGTCAACCATCGCCGCCGGCATCATGCTCACCGCACTG 318
Query 28687 TTACTGAACTGGCGGCAGGCGGCGGGCTACACGATTCTGGCCCCGACAGTGGAGGTGGCA 28746
| || ||||||||| | ||| | | || || |||| ||||| |||| | ||
Sbjct 319 ATCCTCAACTGGCGGGCGTCGGGTGAGTTCATCATCTTGGCGCCGACCAAGGAGATCGCG 378
Query 28747 GCCCACGCCTTCAACCCTGCCAGGGATATGGTACGACGGGACGATGATCTGGATGACCTC 28806
| || ||| | ||| | |||| ||||| | ||||| || || | | |||
Sbjct 379 GATAACTCCTACCTCCCGATCCGGGACATGGTGGGTGCTGACGAAGAGCTCAAGG-CCTT 437
Query 28807 TGTCA-GGTGCAGACACATATCCGGACCATCACCCACCGGGTGACAGACACCACCCTGAA 28865
||| ||||||| || | || ||| | || ||||| ||| || ||||||| ||
Sbjct 438 GCTCAAGGTGCAGGATCACCTGCGCACCGTGACGCACCGTCAGACTAACGCCACCCTCAA 497
Query 28866 GGTGGTGGCAGCCGATCCGAATACGGTGTCCGGTATCAAGTCCGTGGGTACGCTGATTGA 28925
|||||| || || || | |||||||| || | || || | || | | ||||
Sbjct 498 GGTGGTTGCGGCGGACAGCGAGACGGTGTCGGGCAAGAAAGCCATCGGCGTGTTCGTTGA 557
Query 28926 TGAGCTGTGGCTGTTTGGCAAGCAGTACAAGGCGGAGGACATGTTACGTGAAGCCATCGG 28985
||||||||| |||| ||||||| | ||| || |||| |||| | || || |||| ||
Sbjct 558 CGAGCTGTGGGTGTTCGGCAAGCGGGCCAACGCCGAGGCCATGCTGCGCGAGGCCACTGG 617
Query 28986 TGGCCTTGCCTCCCGCCCGGAAGGGTTTGTGGTGTATACGACCACCCAGTCGAATGAACC 29045
|||||| ||||| || || || || || | | | | ||||||||||| ||| ||
Sbjct 618 TGGCCTGGCCTCTCGGCCAGAGGGATTCATCATCTGGGCCACCACCCAGTCCGATGCGCC 677
Query 29046 TCCCGCCGGGGTGTTCAGACAGAAACTGCAGTACGCCCGGGATGTGCGCGACGGCAAAAT 29105
|| ||||| |||||| | ||||| ||| ||||||||| | |||||||||||| | ||
Sbjct 678 GCCGGCCGGCGTGTTCCGGCAGAAGCTGATGTACGCCCGCAAGGTGCGCGACGGCGAGAT 737
Query 29106 TCATGATCCGCACTTTCTGCCGGTGATCTTTGAACACCCTCCTGAAATGGTGGAAAGCGG 29165
||| | || |||||||| | | |||| || | ||| | || |||
Sbjct 738 CGTCGATAAGTCGTTCTTGCCGGTGCTGTATGAATTTCCCAAGGCGATGCTAGACGCCGG 797
Query 29166 GGCTCACCTG--CTGATGGAAAACCTCGCCATGGTCAATCCGAATCTCGGCTATTCAGTG 29223
| |||| | || | || | | ||| ||| |||||| | || || ||
Sbjct 798 CGAACACCGGGACTTCTCTAACGCGT--ACATCACCAACCCGAATTTGGGGCTGTCGGTT 855
Query 29224 GATGAGGCCTTTCTGTACCGGGAGTATCGAAAAGCACGGGAAGCCGGTGAAGAGACATTC 29283
|| || |||| | | || | ||| | || | | | |||||||||| | |||
Sbjct 856 GACGAACCCTTCATCGAGCGTGGGTACGCCCAGGCGCAGCTGGACGGTGAAGAGTCGTTC 915
Query 29284 CGGGGCTTCATGTCAAAACACGCCAATGTGGAAATTGGTCTTGCCCTGCGCTCTGACCGC 29343
|| ||||| || | || ||| ||| || || || || || || | | || || |||
Sbjct 916 CGCGGCTTTCTGGCCAAGCACCTCAACGTCGAGATCGGCCTGGCGTTACTGTCGGATCGC 975
Query 29344 TGGGCGGGGGCGGATTTCTGGGAAGAGCAG------GGCCGTTGTATCAGCCTGGACGAT 29397
||||| || |||||||||||||| | |||| | | || || ||||| ||
Sbjct 976 TGGGCAGGCGCGGATTTCTGGGAGGCGCAGACCTCCGAGCTGTGCCACACGCTGGAGGA- 1034
Query 29398 ATCCTGCT-GCGTGCT--GATGTG-GTGACAGTGGGGATTGACGGCGGAGGGCTGGATGA 29453
|||| | | | ||| || ||| ||| | | || | || ||||| |||||||||||
Sbjct 1035 --CCTGATCGAGCGCTGCGAGGTGATTGATA-TCGGCGTCGATGGCGGGGGGCTGGATGA 1091
Query 29454 TCTGCTGGGGATGTATGTGATTGGGCGTGA-CAGGGAAACCCGCGAATGGCTGGGCTGGG 29512
|||| || | | | || || || ||||| | | ||| |||||| ||||
Sbjct 1092 CTTGCTTGGCTTTGCAGCACTCGGTCGAGAGCAGGGCACACGGCG-TTGGCTGACCTGGA 1150
Query 29513 GCCATGCCTGGGCGCATGAAACCGCGGTGGTCCGACGGAAGAGC-GAGGCGTCCCGGTTT 29571
|||||||||||| || | | | ||| || || || ||| || ||| | || |
Sbjct 1151 CCCATGCCTGGGCCCACCCATCAGTACTGGAGCGGCGTAA-AGCAGAAGCGCCGCGCATC 1209
Query 29572 CAGGATCTTGTTGCCTG-TGGAGATATGACCATTGTCCGGCGTGTCGGGGATGACACGGC 29630
| || ||| | | ||| | ||||| | || || |||| || |||| |
Sbjct 1210 CGCGA-CTTCGCGAAGGATGGGCACCTGACCCTGGTTGAACGCATCGGCGACGACATTGA 1268
Query 29631 GGAAGTGGCGGAATATGTGCGTCGCA--TTCATGAGGCTGAGTTACTGGACCATATCGGT 29688
|| ||||| || || | | |||| || | |||| | | |||||| | ||||
Sbjct 1269 GGCGGTGGCACAA-CTG-GTGGCGCAGGTTGAGCAGGCCGGCCTGCTGGACAAGGTCGGG 1326
Query 29689 ATTGACCCGTCAGGGGTGGGGCAGATTCTGGATTCACTGGCGGAAGCC---GGGATCCCC 29745
| |||||| | || || ||| ||| || || | || ||||||| || || ||
Sbjct 1327 CTGGACCCGGCCGGCGTCGGGGCGATCCTCGACGCGCT---GGAAGCCATGGGTATTCCG 1383
Query 29746 GACGGAATTGTGGTGGGGATAAGCCAGGGCTGGAAACTGGGCGGGGCCATTAAAACCACC 29805
|| | | | || || || |||||| |||||||| ||||| ||||| ||
Sbjct 1384 CGCGAGAAAATCGACGGCATCTCACAAGGCTGGCGCCTGGGCGGAGCCATCAAAACTGCC 1443
Query 29806 GAGCGCAAACTGGCTGAAGGGGTGCTGGTGCATGGTGACCAGCCCCTGATGGCCTGGTGT 29865
|||||||||||||| || || |||| | || || | |||||| |||||||||||||
Sbjct 1444 GAGCGCAAACTGGCCGAGGGCACGCTGCTACACGGGGGCCAGCCGATGATGGCCTGGTGC 1503
Query 29866 GTCGGCAATGCCCGGGTGGAGCCTAAAGGTAACGCCATTCTTATCACCAAACAGGCCAGT 29925
||| || ||| || ||||| || ||| | || || || || |||||||||||
Sbjct 1504 TGCGGTAACGCCAAAGTCGAGCCCCGTGGCAACTCGATCCTCATTACTAAACAGGCCAGC 1563
Query 29926 GGACGGGGAAAAATTGACCCGCTGATGGCGCTGTTCAATGCGGTCTCCCTGATGTCCCTT 29985
|| || || || ||||||||||||||||| ||||| || || | |||||| ||||
Sbjct 1564 GGCTCGGCCAAGATCGACCCGCTGATGGCGCTATTCAACGCTGTGACGCTGATGGCCCTC 1623
Query 29986 AACCCGGA 29993
|| || ||
Sbjct 1624 AATCCAGA 1631
>seq29700
Length=774
Score = 89.7 bits (98), Expect = 2e-13
Identities = 134/189 (71%), Gaps = 6/189 (3%)
Strand=Plus/Plus
Query 29769 CCAGGGCTGGAAACTGGGCGGGGCCATTAAAACCACCGAGCGCAAACTGGCTGAAGGGGT 29828
|||||||||| ||| ||| || || |||||||| |||||||| | || | || |
Sbjct 409 CCAGGGCTGGCGACTCAACGGCGCAATCAAAACCACAGAGCGCAAGGTTGCGGGCGGCGA 468
Query 29829 GCTGGTGCATGGTGACCAGCCCCTGATGGCCTGGTGTGTCGGCAATGCCCG---GGTGGA 29885
| | ||||| |||| | || || ||||||||||| |||||||| ||| | || |
Sbjct 469 GTTTGTGCACGGTGGCACGCGGCTCATGGCCTGGTGCGTCGGCAACGCCAGAACTGTTGC 528
Query 29886 GCCTAAAGGTAACGCCATTCTTATCACCAAACAGGCCAGTGGACGGGGAAAAATTGACCC 29945
| | || |||||||| |||| |||||||| || || || ||| ||||||||
Sbjct 529 GGTT---GGCAACGCCATAGCGATCAACAAACAGGTGAGCGGGTCGGCAAAGATTGACCC 585
Query 29946 GCTGATGGC 29954
||| |||||
Sbjct 586 GCTCATGGC 594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 175481575557348
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |