Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_023503.1
Length=48800
Score E
Sequences producing significant alignments: (Bits) Value
seq25254 194 5e-45
seq22982 154 5e-33
>seq25254
Length=16629
Score = 194 bits (214), Expect = 5e-45
Identities = 803/1242 (65%), Gaps = 50/1242 (4%)
Strand=Plus/Minus
Query 1693 GCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGTTTACACTGAA 1752
||||||||| | | ||||| || ||||||||||| | |||| || || | |||
Sbjct 16485 GCACGTGAAATTTTGGACTCTCGTGGTAACCCAACCATCGAAGCTGATGTAATCTTGGAA 16426
Query 1753 TCTGGTGCATTCGGTCGCGGTATG-GTTCCTTCAGGAGCATCAACTGGTGAACACGAAGC 1811
|| || | | | || || | ||| | || || || || ||||||||| | |||||
Sbjct 16425 TCCGGCGTAGTTGGCCGTGC-ATGTGCACCATCTGGTGCTTCAACTGGTTCTCGTGAAGC 16367
Query 1812 AGTAGAACTTCGTGATGGTGACAAAGCTCGTTACGGTGGTCTTGGTACTCAAAAAGCAGT 1871
||||||| |||||||| || ||||| || || || || ||||| || ||
Sbjct 16366 TTTAGAACTGCGTGATGGCGATAAAGCACGCTATTTGGGCAAAGGCGTTCAAACTGCGGT 16307
Query 1872 TGATAACGTAAACAACGTTATTGC-TGAGCACATCATCGGATTCGAC-GTACGTGATCAA 1929
| |||| || || | | ||| | | ||| | | || || | | ||| || |||
Sbjct 16306 TAATAATGTTAATA-CTTTAATCCGTGATG-CTTTATTGGGTAAATCAGTATTCGAACAA 16249
Query 1930 CAAGGTATTGACCGCGCAATGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTTGGT 1989
||| ||||| ||||||||||| | || |||||| ||| |||| ||||| |||
Sbjct 16248 AAAGACATTGATAATACAATGATCGCTTTAGATGGTACTGAAAATAAAGAAAAACTAGGT 16189
Query 1990 GCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTTGAA 2049
|| ||||| | ||| | ||| ||| | || | || || || |||||||| | ||
Sbjct 16188 GCTAACGCAACTCTGGCTGTATCTTTAGCCGCTGCCCGTGCTGCTGCTGATGAAAAGAAA 16129
Query 2050 GTTCCACTTTACAGCTACCTTGGCG----GATTCAACACTAAAGTTC-----TTCCAACT 2100
|||| |||| | ||| ||| | | | || ||| || | || |
Sbjct 16128 ATTCCTCTTTTCCAATACATTGCAGACCTGCGTGGCCAGAAAACTTTGACTATGCCTGTT 16069
Query 2101 CCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGAA 2160
||||||||||| ||| | || ||||| |||| |||| | | | | | || |||
Sbjct 16068 CCAATGATGAATATCTTAAATGGTGGCGCTCATGCAGATAACACTGTTGATATTCAGGAA 16009
Query 2161 TTTATGATTGTACCTGCTGG-TGCACCAACATTCAAAGA-AGCGCTTCGTTGGGGTGCTG 2218
|| ||||||| ||||| || | ||| |||| || ||| || ||| ||||| |
Sbjct 16008 TTCATGATTGAACCTGTGGGCTTTACCT-CATTTGCTGAGAGC-CTGCGTGCTGGTGCAG 15951
Query 2219 AAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAA-ACAGCCGTAGGT 2277
|||| || || | |||| | | |||||||| | ||| || || || ||||||
Sbjct 15950 AAATTTTTCATTCT-TTAAAATCAGTTTTAAAGAAACAAGGCTTAAATACTGCAGTAGGT 15892
Query 2278 GACGAAGGTGGTTTCGCACCTCGT-TTCGACGGAACTGAAGATGGTGT---TGAAACTAT 2333
|| ||||||||||| ||||| |||| || |||||| | | || || | |
Sbjct 15891 GATGAAGGTGGTTTTGCACCAAACCTTCGTTCAAA-TGAAGAAGCAATCACTGTAATTCT 15833
Query 2334 CATCAAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTTGA 2393
||| || || || |||| ||| | | ||| || | | | | || ||
Sbjct 15832 T-TCA--GCAATTGAGCAAACTGGCTATAAAGCTGGTTCTGATATTATGCTGGCGCTGGA 15776
Query 2394 CTGTGCATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTGA 2453
||||||||| || |||||||| | ||| || || || || |||
Sbjct 15775 CTGTGCATCTTCAGAATTCTATAA---AGATGGTCAA---------TA---TATCCTTGC 15731
Query 2454 AGGTGAAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCG---ACTACCTTGAAGAATT 2510
|||||| ||| | | | | | | ||| | || | | |||| |||| || |
Sbjct 15730 AGGTGAGGGCAATAAGG--CATTCACCAGCA-ACCAGTTTGCTGACTATCTTGCAGGTCT 15674
Query 2511 GGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGG 2570
||| || | || ||||| ||| | || |||||||| ||||||| |||||||| ||
Sbjct 15673 GGTAAATCAGTATCCAATTATCTCGATTGAAGATGGCCTGGACGAGTCTGACTGGGAAGG 15614
Query 2571 TTGGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTT 2630
||| | || ||| |||||||| || |||| || || ||||| ||| | ||
Sbjct 15613 CTGGTCTTACCTGACTTCTATTCTTGGTGACAAGATTCAGTTAGTAGGTGATGACCTGTT 15554
Query 2631 CGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCT 2690
||||| || | || | |||||| | | | ||||||||| |||||
Sbjct 15553 TGTAACCAATCCGAAGATACTACAGCGTGGTATTAATGGGAAGGTTGCTAACTCTATCCT 15494
Query 2691 TATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAA 2750
||||||| |||||| |||||||||||||| ||||| | ||||| ||| | | || ||
Sbjct 15493 TATCAAATATAACCAGATCGGTACTTTGACCGAAACACTCGACGCAATCTATCTTGCTAA 15434
Query 2751 AGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAAT 2810
|| | ||| ||| | | ||| | || ||||||||||| |||||||||||||| || ||
Sbjct 15433 AGCAAATGGTTACTCGACTGTAATTTCTCACCGTTCAGGGGAAACTGAAGATTCTACTAT 15374
Query 2811 CGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTAC 2870
|| ||| |||| || | || || || || ||||| || |||||| | | ||| |
Sbjct 15373 TGCAGATCTTGCCGTAGGTACAGCAGCGGGCCAGATTAAAACCGGTTCACTTTGCCGTTC 15314
Query 2871 TGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912
|||||| | || ||||| || ||||| || ||||| |||||
Sbjct 15313 TGACCGCGTAGCAAAATATAATCAATTACTACGTATTGAAGA 15272
>seq22982
Length=4319
Score = 154 bits (170), Expect = 5e-33
Identities = 293/424 (69%), Gaps = 8/424 (2%)
Strand=Plus/Minus
Query 2523 CCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAA-ATCTC 2581
||| ||||| | ||||||||||| ||||||| ||| |||| || ||||| ||| |
Sbjct 1271 CCCGATCATTTCGATCGAAGATGGCCTGGACGAGTCCGATTGGGCTGGCTGGAAGATC-C 1213
Query 2582 TTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACA 2641
| ||||| | || | || || ||| |||| ||||||||| | ||||| || || |
Sbjct 1212 TCACTGACAAGATCGGCGAGAAGGTGCAACTGGTCGGTGACGACCTGTTCGTGACCAATA 1153
Query 2642 CTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT-GCTAACTCAATCCTTATCAAAGTT 2700
| ||| | |||| || | |||| | | |||||| || || ||||| |
Sbjct 1152 CCAAGATCCTCAAGGAAGGCATCG-AGAAGGGCATCGGTAACTCGATTCTGATCAAGTTC 1094
Query 2701 AACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGA 2760
||||| ||||| | |||| || || | || || ||| | ||||| || | || ||
Sbjct 1093 AACCAGATCGGCTCGCTGACCGAGACCCTGGAAGCCATCCAGATGGCCAAGGCTGCCGGT 1034
Query 2761 TACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATT 2820
||||| || || | || ||||| || |||||||| ||||| || || ||||| || |
Sbjct 1033 TACACCGCCGTGATCTCCCACCGCTCGGGTGAAACCGAAGACTCCACCATCGCCGACCTG 974
Query 2821 GCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATT 2880
|| || | ||| || ||||| || ||||| ||||| ||| || | ||||| |
Sbjct 973 GCTGTGGGTACTGCGGCCGGTCAGATCAAGACGGGTTCGCTGTGCCGCTCCGACCGCGTG 914
Query 2881 GCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTG--AAGTTGCAGAATACC 2938
| || |||||||||||||| || |||||||| ||||| |||| ||| || | ||||
Sbjct 913 TCGAAGTACAACCAATTGCTGCGCATCGAAGAGCAACTGGGTGCCAAG--GCGGTTTACC 856
Query 2939 GTGG 2942
||||
Sbjct 855 GTGG 852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 155981490162372
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |