Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq25254 194 5e-45 seq22982 154 5e-33 >seq25254 Length=16629 Score = 194 bits (214), Expect = 5e-45 Identities = 803/1242 (65%), Gaps = 50/1242 (4%) Strand=Plus/Minus Query 1693 GCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGTTTACACTGAA 1752 ||||||||| | | ||||| || ||||||||||| | |||| || || | ||| Sbjct 16485 GCACGTGAAATTTTGGACTCTCGTGGTAACCCAACCATCGAAGCTGATGTAATCTTGGAA 16426 Query 1753 TCTGGTGCATTCGGTCGCGGTATG-GTTCCTTCAGGAGCATCAACTGGTGAACACGAAGC 1811 || || | | | || || | ||| | || || || || ||||||||| | ||||| Sbjct 16425 TCCGGCGTAGTTGGCCGTGC-ATGTGCACCATCTGGTGCTTCAACTGGTTCTCGTGAAGC 16367 Query 1812 AGTAGAACTTCGTGATGGTGACAAAGCTCGTTACGGTGGTCTTGGTACTCAAAAAGCAGT 1871 ||||||| |||||||| || ||||| || || || || ||||| || || Sbjct 16366 TTTAGAACTGCGTGATGGCGATAAAGCACGCTATTTGGGCAAAGGCGTTCAAACTGCGGT 16307 Query 1872 TGATAACGTAAACAACGTTATTGC-TGAGCACATCATCGGATTCGAC-GTACGTGATCAA 1929 | |||| || || | | ||| | | ||| | | || || | | ||| || ||| Sbjct 16306 TAATAATGTTAATA-CTTTAATCCGTGATG-CTTTATTGGGTAAATCAGTATTCGAACAA 16249 Query 1930 CAAGGTATTGACCGCGCAATGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTTGGT 1989 ||| ||||| ||||||||||| | || |||||| ||| |||| ||||| ||| Sbjct 16248 AAAGACATTGATAATACAATGATCGCTTTAGATGGTACTGAAAATAAAGAAAAACTAGGT 16189 Query 1990 GCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTTGAA 2049 || ||||| | ||| | ||| ||| | || | || || || |||||||| | || Sbjct 16188 GCTAACGCAACTCTGGCTGTATCTTTAGCCGCTGCCCGTGCTGCTGCTGATGAAAAGAAA 16129 Query 2050 GTTCCACTTTACAGCTACCTTGGCG----GATTCAACACTAAAGTTC-----TTCCAACT 2100 |||| |||| | ||| ||| | | | || ||| || | || | Sbjct 16128 ATTCCTCTTTTCCAATACATTGCAGACCTGCGTGGCCAGAAAACTTTGACTATGCCTGTT 16069 Query 2101 CCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGAA 2160 ||||||||||| ||| | || ||||| |||| |||| | | | | | || ||| Sbjct 16068 CCAATGATGAATATCTTAAATGGTGGCGCTCATGCAGATAACACTGTTGATATTCAGGAA 16009 Query 2161 TTTATGATTGTACCTGCTGG-TGCACCAACATTCAAAGA-AGCGCTTCGTTGGGGTGCTG 2218 || ||||||| ||||| || | ||| |||| || ||| || ||| ||||| | Sbjct 16008 TTCATGATTGAACCTGTGGGCTTTACCT-CATTTGCTGAGAGC-CTGCGTGCTGGTGCAG 15951 Query 2219 AAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAA-ACAGCCGTAGGT 2277 |||| || || | |||| | | |||||||| | ||| || || || |||||| Sbjct 15950 AAATTTTTCATTCT-TTAAAATCAGTTTTAAAGAAACAAGGCTTAAATACTGCAGTAGGT 15892 Query 2278 GACGAAGGTGGTTTCGCACCTCGT-TTCGACGGAACTGAAGATGGTGT---TGAAACTAT 2333 || ||||||||||| ||||| |||| || |||||| | | || || | | Sbjct 15891 GATGAAGGTGGTTTTGCACCAAACCTTCGTTCAAA-TGAAGAAGCAATCACTGTAATTCT 15833 Query 2334 CATCAAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTTGA 2393 ||| || || || |||| ||| | | ||| || | | | | || || Sbjct 15832 T-TCA--GCAATTGAGCAAACTGGCTATAAAGCTGGTTCTGATATTATGCTGGCGCTGGA 15776 Query 2394 CTGTGCATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTGA 2453 ||||||||| || |||||||| | ||| || || || || ||| Sbjct 15775 CTGTGCATCTTCAGAATTCTATAA---AGATGGTCAA---------TA---TATCCTTGC 15731 Query 2454 AGGTGAAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCG---ACTACCTTGAAGAATT 2510 |||||| ||| | | | | | | ||| | || | | |||| |||| || | Sbjct 15730 AGGTGAGGGCAATAAGG--CATTCACCAGCA-ACCAGTTTGCTGACTATCTTGCAGGTCT 15674 Query 2511 GGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGG 2570 ||| || | || ||||| ||| | || |||||||| ||||||| |||||||| || Sbjct 15673 GGTAAATCAGTATCCAATTATCTCGATTGAAGATGGCCTGGACGAGTCTGACTGGGAAGG 15614 Query 2571 TTGGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTT 2630 ||| | || ||| |||||||| || |||| || || ||||| ||| | || Sbjct 15613 CTGGTCTTACCTGACTTCTATTCTTGGTGACAAGATTCAGTTAGTAGGTGATGACCTGTT 15554 Query 2631 CGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCT 2690 ||||| || | || | |||||| | | | ||||||||| ||||| Sbjct 15553 TGTAACCAATCCGAAGATACTACAGCGTGGTATTAATGGGAAGGTTGCTAACTCTATCCT 15494 Query 2691 TATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAA 2750 ||||||| |||||| |||||||||||||| ||||| | ||||| ||| | | || || Sbjct 15493 TATCAAATATAACCAGATCGGTACTTTGACCGAAACACTCGACGCAATCTATCTTGCTAA 15434 Query 2751 AGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAAT 2810 || | ||| ||| | | ||| | || ||||||||||| |||||||||||||| || || Sbjct 15433 AGCAAATGGTTACTCGACTGTAATTTCTCACCGTTCAGGGGAAACTGAAGATTCTACTAT 15374 Query 2811 CGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTAC 2870 || ||| |||| || | || || || || ||||| || |||||| | | ||| | Sbjct 15373 TGCAGATCTTGCCGTAGGTACAGCAGCGGGCCAGATTAAAACCGGTTCACTTTGCCGTTC 15314 Query 2871 TGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 |||||| | || ||||| || ||||| || ||||| ||||| Sbjct 15313 TGACCGCGTAGCAAAATATAATCAATTACTACGTATTGAAGA 15272 >seq22982 Length=4319 Score = 154 bits (170), Expect = 5e-33 Identities = 293/424 (69%), Gaps = 8/424 (2%) Strand=Plus/Minus Query 2523 CCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAA-ATCTC 2581 ||| ||||| | ||||||||||| ||||||| ||| |||| || ||||| ||| | Sbjct 1271 CCCGATCATTTCGATCGAAGATGGCCTGGACGAGTCCGATTGGGCTGGCTGGAAGATC-C 1213 Query 2582 TTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACA 2641 | ||||| | || | || || ||| |||| ||||||||| | ||||| || || | Sbjct 1212 TCACTGACAAGATCGGCGAGAAGGTGCAACTGGTCGGTGACGACCTGTTCGTGACCAATA 1153 Query 2642 CTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT-GCTAACTCAATCCTTATCAAAGTT 2700 | ||| | |||| || | |||| | | |||||| || || ||||| | Sbjct 1152 CCAAGATCCTCAAGGAAGGCATCG-AGAAGGGCATCGGTAACTCGATTCTGATCAAGTTC 1094 Query 2701 AACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGA 2760 ||||| ||||| | |||| || || | || || ||| | ||||| || | || || Sbjct 1093 AACCAGATCGGCTCGCTGACCGAGACCCTGGAAGCCATCCAGATGGCCAAGGCTGCCGGT 1034 Query 2761 TACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATT 2820 ||||| || || | || ||||| || |||||||| ||||| || || ||||| || | Sbjct 1033 TACACCGCCGTGATCTCCCACCGCTCGGGTGAAACCGAAGACTCCACCATCGCCGACCTG 974 Query 2821 GCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATT 2880 || || | ||| || ||||| || ||||| ||||| ||| || | ||||| | Sbjct 973 GCTGTGGGTACTGCGGCCGGTCAGATCAAGACGGGTTCGCTGTGCCGCTCCGACCGCGTG 914 Query 2881 GCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTG--AAGTTGCAGAATACC 2938 | || |||||||||||||| || |||||||| ||||| |||| ||| || | |||| Sbjct 913 TCGAAGTACAACCAATTGCTGCGCATCGAAGAGCAACTGGGTGCCAAG--GCGGTTTACC 856 Query 2939 GTGG 2942 |||| Sbjct 855 GTGG 852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155981490162372